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NYX nyctalopin [ Meleagris gallopavo (turkey) ]

Gene ID: 100544323, updated on 8-Mar-2024

Summary

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Gene symbol
NYX
Gene description
nyctalopin
Gene type
protein coding
RefSeq status
MODEL
Organism
Meleagris gallopavo
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Meleagridinae; Meleagris
Orthologs
human mouse all
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Genomic context

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See NYX in Genome Data Viewer
Location:
chromosome: 1
Exon count:
1
Annotation release Status Assembly Chr Location
103 current Turkey_5.1 (GCF_000146605.3) 1 NC_015011.2 (109435351..109437955, complement)
Build 1.1 previous assembly Turkey_2.01 (GCF_000146605.1) 1 NC_015011.1 (117973833..117975260, complement)

Chromosome 1 - NC_015011.2Genomic Context describing neighboring genes Neighboring gene calcium/calmodulin dependent serine protein kinase Neighboring gene G protein-coupled receptor 82 Neighboring gene G protein-coupled receptor 34 Neighboring gene uncharacterized LOC116217490 Neighboring gene DEAD-box helicase 3 X-linked Neighboring gene uncharacterized LOC104914628

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nyctalopin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Meleagris gallopavo Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Turkey_5.1 Primary Assembly

Genomic

  1. NC_015011.2 Reference Turkey_5.1 Primary Assembly

    Range
    109435351..109437955 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031557071.1 → XP_031412931.1  nyctalopin

    UniProtKB/TrEMBL
    G1NR56
    Conserved Domains (4) summary
    smart00082
    Location:331 → 365
    LRRCT; Leucine rich repeat C-terminal domain
    COG4886
    Location:61 → 315
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00033
    Location:63 → 82
    LRR_RI; leucine-rich repeat [structural motif]
    pfam01462
    Location:27 → 56
    LRRNT; Leucine rich repeat N-terminal domain
Nucleotide Protein
Heading Accession and Version

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