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SMPD4 sphingomyelin phosphodiesterase 4 [ Meleagris gallopavo (turkey) ]

Gene ID: 100539218, updated on 8-Mar-2024

Summary

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Gene symbol
SMPD4
Gene description
sphingomyelin phosphodiesterase 4
See related
Ensembl:ENSMGAG00000007759
Gene type
protein coding
RefSeq status
MODEL
Organism
Meleagris gallopavo
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Meleagridinae; Meleagris
Orthologs
human mouse all
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Genomic context

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See SMPD4 in Genome Data Viewer
Location:
chromosome: 17
Exon count:
19
Annotation release Status Assembly Chr Location
103 current Turkey_5.1 (GCF_000146605.3) 17 NC_015027.2 (7798693..7814978, complement)
Build 1.1 previous assembly Turkey_2.01 (GCF_000146605.1) 17 NC_015027.1 (8709519..8725554, complement)

Chromosome 17 - NC_015027.2Genomic Context describing neighboring genes Neighboring gene glutathione hydrolase 5 proenzyme-like Neighboring gene glutathione hydrolase 5 proenzyme Neighboring gene mediator complex subunit 15 Neighboring gene mediator of RNA polymerase II transcription subunit 15 Neighboring gene kelch like family member 22

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sphingomyelin phosphodiesterase D activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ceramide biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in glycerophospholipid catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sphingomyelin catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: sphingomyelin phosphodiesterase 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Meleagris gallopavo Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Turkey_5.1 Primary Assembly

Genomic

  1. NC_015027.2 Reference Turkey_5.1 Primary Assembly

    Range
    7798693..7814978 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003211050.3 → XP_003211098.2  LOW QUALITY PROTEIN: sphingomyelin phosphodiesterase 4

    UniProtKB/TrEMBL
    G1N709
    Related
    ENSMGAP00000007946.2, ENSMGAT00000008735.2
    Conserved Domains (1) summary
    pfam14724
    Location:29 → 793
    mit_SMPDase; Mitochondrial-associated sphingomyelin phosphodiesterase
Nucleotide Protein
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