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SPTSSB serine palmitoyltransferase small subunit B [ Meleagris gallopavo (turkey) ]

Gene ID: 100538639, updated on 19-Jun-2024

Summary

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Gene symbol
SPTSSB
Gene description
serine palmitoyltransferase small subunit B
Gene type
protein coding
RefSeq status
MODEL
Organism
Meleagris gallopavo
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Meleagridinae; Meleagris
Orthologs
human mouse all
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Genomic context

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See SPTSSB in Genome Data Viewer
Location:
chromosome: 11
Exon count:
2
Annotation release Status Assembly Chr Location
103 current Turkey_5.1 (GCF_000146605.3) 11 NC_015021.2 (21664640..21671136)
Build 1.1 previous assembly Turkey_2.01 (GCF_000146605.1) 11 NC_015021.1 (22134108..22139592)

Chromosome 11 - NC_015021.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC109369536 Neighboring gene otolin 1 Neighboring gene serine palmitoyltransferase small subunit B-like Neighboring gene NMD3 ribosome export adaptor Neighboring gene uncharacterized LOC104912717

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables serine C-palmitoyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ceramide biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endoplasmic reticulum organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of serine C-palmitoyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of serine palmitoyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
serine palmitoyltransferase small subunit B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Meleagris gallopavo Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Turkey_5.1 Primary Assembly

Genomic

  1. NC_015021.2 Reference Turkey_5.1 Primary Assembly

    Range
    21664640..21671136
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003209223.4 → XP_003209271.1  serine palmitoyltransferase small subunit B

    Conserved Domains (1) summary
    pfam11779
    Location:30 → 81
    SPT_ssu-like; Small subunit of serine palmitoyltransferase-like
Nucleotide Protein
Heading Accession and Version

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