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arid4b AT-rich interaction domain 4B [ Danio rerio (zebrafish) ]

Gene ID: 100537923, updated on 2-Nov-2024

Summary

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Official Symbol
arid4bprovided by ZNC
Official Full Name
AT-rich interaction domain 4Bprovided by ZNC
Primary source
ZFIN:ZDB-GENE-160607-1
See related
Ensembl:ENSDARG00000090656 AllianceGenome:ZFIN:ZDB-GENE-160607-1
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
tomm20a; zgc:73165
Summary
Predicted to enable DNA binding activity. Predicted to be located in nucleus. Orthologous to human ARID4B (AT-rich interaction domain 4B). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
human mouse all
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Genomic context

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See arid4b in Genome Data Viewer
Location:
chromosome: 13
Exon count:
26
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 13 NC_007124.7 (49596529..49721461, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 13 NC_007124.6 (49305814..49431257, complement)

Chromosome 13 - NC_007124.7Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORA14 Neighboring gene translocase of outer mitochondrial membrane 20 Neighboring gene small nucleolar RNA SNORA14 Neighboring gene geranylgeranyl diphosphate synthase 1 Neighboring gene beta-1,3-N-acetylgalactosaminyltransferase 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. A network of epigenetic regulators guides developmental haematopoiesis in vivo. Huang HT, et al. Nat Cell Biol, 2013 Dec. PMID 24240475, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  3. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
AT-rich interactive domain-containing protein 4B
Names
AT rich interactive domain 4B (RBP1-like)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007124.7 Reference GRCz11 Primary Assembly

    Range
    49596529..49721461 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_068213119.1 → XP_068069220.1  AT-rich interactive domain-containing protein 4B isoform X3

  2. XM_003199758.6 → XP_003199806.2  AT-rich interactive domain-containing protein 4B isoform X4

    UniProtKB/TrEMBL
    A0A8M1RMF8
    Related
    ENSDARP00000157304.1, ENSDART00000189805.1
    Conserved Domains (3) summary
    smart00333
    Location:60 → 109
    TUDOR; Tudor domain
    smart01014
    Location:309 → 394
    ARID; ARID/BRIGHT DNA binding domain
    pfam08169
    Location:170 → 264
    RBB1NT; RBB1NT (NUC162) domain

  3. XM_005173032.5 → XP_005173089.1  AT-rich interactive domain-containing protein 4B isoform X1

    UniProtKB/TrEMBL
    A0A8M2BKB0
    Conserved Domains (4) summary
    smart00333
    Location:60 → 109
    TUDOR; Tudor domain
    smart01014
    Location:309 → 394
    ARID; ARID/BRIGHT DNA binding domain
    pfam08169
    Location:170 → 264
    RBB1NT; RBB1NT (NUC162) domain
    pfam11717
    Location:543 → 596
    Tudor-knot; RNA binding activity-knot of a chromodomain

  4. XM_005173033.5 → XP_005173090.1  AT-rich interactive domain-containing protein 4B isoform X2

    UniProtKB/TrEMBL
    A0A8M2BKC0, F1R2N8
    Related
    ENSDARP00000107839.3, ENSDART00000128415.3
    Conserved Domains (4) summary
    smart00333
    Location:60 → 109
    TUDOR; Tudor domain
    smart01014
    Location:309 → 394
    ARID; ARID/BRIGHT DNA binding domain
    pfam08169
    Location:170 → 264
    RBB1NT; RBB1NT (NUC162) domain
    pfam11717
    Location:543 → 596
    Tudor-knot; RNA binding activity-knot of a chromodomain
Nucleotide Protein
Heading Accession and Version

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