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LOC100537640 carbohydrate sulfotransferase 15 [ Danio rerio (zebrafish) ]

Gene ID: 100537640, updated on 12-Sep-2024

Summary

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Gene symbol
LOC100537640
Gene description
carbohydrate sulfotransferase 15
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Annotation information
Annotation category: partial on reference assembly
Orthologs
all
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Genomic context

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See LOC100537640 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) Unplaced Scaffold NW_003335153.1 (9347..15077, complement)
105 previous assembly GRCz10 (GCF_000002035.5) Unplaced Scaffold NW_003335153.1 (10618..13747, complement)

NW_003335153.1Genomic Context describing neighboring genes Neighboring gene inactive carboxypeptidase-like protein X2 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
carbohydrate sulfotransferase 15

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NW_003335153.1 Reference GRCz11 Primary Assembly

    Range
    9347..15077 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021470812.2 → XP_021326487.1  carbohydrate sulfotransferase 15

    UniProtKB/TrEMBL
    A0A8M9P741
    Conserved Domains (1) summary
    cl21551
    Location:189 → 426
    Sulfotransfer_3; Sulfotransferase family
Nucleotide Protein Strain
Heading Accession and Version

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