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gprin3b GPRIN family member 3b [ Danio rerio (zebrafish) ]

Gene ID: 100536832, updated on 27-Mar-2024

Summary

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Official Symbol
gprin3bprovided by ZNC
Official Full Name
GPRIN family member 3bprovided by ZNC
Primary source
ZFIN:ZDB-GENE-090313-376
See related
Ensembl:ENSDARG00000075043 AllianceGenome:ZFIN:ZDB-GENE-090313-376
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
gprin3; si:dkeyp-123h10.2
Summary
Predicted to be involved in neuron projection development. Predicted to be active in plasma membrane. Orthologous to human GPRIN3 (GPRIN family member 3). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human mouse all
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Genomic context

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See gprin3b in Genome Data Viewer
Location:
chromosome: 1
Exon count:
2
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 1 NC_007112.7 (50847543..50859099, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 1 NC_007112.6 (50203980..50254693, complement)

Chromosome 1 - NC_007112.7Genomic Context describing neighboring genes Neighboring gene family with sequence similarity 13 member A Neighboring gene zgc:154142 Neighboring gene orthodenticle homeobox 2a Neighboring gene malate dehydrogenase 1Aa, NAD (soluble)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
  2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  4. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by ZFIN

Process Evidence Code Pubs
involved_in neuron projection development IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
G protein-regulated inducer of neurite outgrowth 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007112.7 Reference GRCz11 Primary Assembly

    Range
    50847543..50859099 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005155400.3 → XP_005155457.1  G protein-regulated inducer of neurite outgrowth 3

    See identical proteins and their annotated locations for XP_005155457.1

    UniProtKB/TrEMBL
    A0A8M9QGD4, B8A5Y8
    Related
    ENSDARP00000116939.1, ENSDART00000137648.2
    Conserved Domains (1) summary
    pfam15235
    Location:459 → 583
    GRIN_C; G protein-regulated inducer of neurite outgrowth C-terminus

  2. XM_021477275.1 → XP_021332950.1  G protein-regulated inducer of neurite outgrowth 3

    UniProtKB/TrEMBL
    A0A8M9QGD4, B8A5Y8
    Conserved Domains (1) summary
    pfam15235
    Location:459 → 583
    GRIN_C; G protein-regulated inducer of neurite outgrowth C-terminus
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials