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mmadhcb metabolism of cobalamin associated Db [ Ictalurus punctatus (channel catfish) ]

Gene ID: 100529035, updated on 8-Mar-2024

Summary

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Gene symbol
mmadhcb
Gene description
metabolism of cobalamin associated Db
See related
Ensembl:ENSIPUG00000001943
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Ictalurus punctatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
Also known as
mmad; mmadhc
Orthologs
human zebrafish all
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Genomic context

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See mmadhcb in Genome Data Viewer
Location:
chromosome: 6
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2023_03 current Coco_2.0 (GCF_001660625.3) 6 NC_030421.2 (13202326..13211702, complement)
101 previous assembly IpCoco_1.2 (GCF_001660625.2) 6 NC_030421.1 (20624764..20634139)

Chromosome 6 - NC_030421.2Genomic Context describing neighboring genes Neighboring gene LY6/PLAUR domain containing 6B Neighboring gene uncharacterized LOC128632913 Neighboring gene LY6/PLAUR domain containing 6 Neighboring gene Rho family GTPase 3b Neighboring gene uncharacterized LOC108266221

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Identification and characterization of full-length cDNAs in channel catfish (Ictalurus punctatus) and blue catfish (Ictalurus furcatus). Chen F, et al. PLoS One, 2010 Jul 12. PMID 20634964, Free PMC Article
  2. Efficient assembly and annotation of the transcriptome of catfish by RNA-Seq analysis of a doubled haploid homozygote. Liu S, et al. BMC Genomics, 2012 Nov 5. PMID 23127152, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cobalamin metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
metabolism of cobalamin associated Db
Names
metabolism of cobalamin associated D
methylmalonic aciduria and homocystinuria, cblD type
mitochondrial methylmalonic aciduria and homocystinuria type d protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001201305.1 → NP_001188234.1  metabolism of cobalamin associated Db

    See identical proteins and their annotated locations for NP_001188234.1

    Status: PROVISIONAL

    Source sequence(s)
    GU589471
    UniProtKB/TrEMBL
    E3TGI5
    Related
    ENSIPUP00000002756.1, ENSIPUT00000002902.1
    Conserved Domains (1) summary
    pfam10229
    Location:24 → 288
    DUF2246; Uncharacterized conserved protein (DUF2246)

RefSeqs of Annotated Genomes: GCF_001660625.3-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coco_2.0 Primary Assembly

Genomic

  1. NC_030421.2 Reference Coco_2.0 Primary Assembly

    Range
    13202326..13211702 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017469047.3 → XP_017324536.1  metabolism of cobalamin associated Db isoform X1

    UniProtKB/TrEMBL
    A0A2D0R398
    Related
    ENSIPUP00000002741.1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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