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sh3bgrl2 SH3 domain binding glutamate-rich protein like 2 [ Ictalurus punctatus (channel catfish) ]

Gene ID: 100528889, updated on 20-Aug-2024

Summary

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Gene symbol
sh3bgrl2
Gene description
SH3 domain binding glutamate-rich protein like 2
See related
EnsemblRapid:ENSIPUG00020007833
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Ictalurus punctatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
Also known as
sh3l2
Annotation information
Annotation category: partial on reference assembly
Orthologs
human zebrafish all
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Genomic context

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See sh3bgrl2 in Genome Data Viewer
Location:
chromosome: 15
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_03 current Coco_2.0 (GCF_001660625.3) 15 NC_030430.2 (21832373..21841997)
101 previous assembly IpCoco_1.2 (GCF_001660625.2) 15 NC_030430.1 (21202318..21211989)

Chromosome 15 - NC_030430.2Genomic Context describing neighboring genes Neighboring gene high mobility group nucleosomal binding domain 3 Neighboring gene lebercilin LCA5 Neighboring gene uncharacterized LOC108276016 Neighboring gene sh3 domain-binding glutamic acid-rich-like protein 3 Neighboring gene small nucleolar RNA SNORD101 Neighboring gene ribosomal protein S12

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Identification and characterization of full-length cDNAs in channel catfish (Ictalurus punctatus) and blue catfish (Ictalurus furcatus). Chen F, et al. PLoS One, 2010 Jul 12. PMID 20634964, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
SH3 domain-binding glutamic acid-rich-like protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001201159.1 → NP_001188088.1  SH3 domain-binding glutamic acid-rich-like protein 2

    See identical proteins and their annotated locations for NP_001188088.1

    Status: PROVISIONAL

    Source sequence(s)
    GU589192
    UniProtKB/TrEMBL
    E3TFQ8
    Related
    ENSIPUP00020013102.1, ENSIPUT00020016426.1
    Conserved Domains (1) summary
    cd03030
    Location:2 → 97
    GRX_SH3BGR; Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. ...

RefSeqs of Annotated Genomes: GCF_001660625.3-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coco_2.0 Primary Assembly

Genomic

  1. NC_030430.2 Reference Coco_2.0 Primary Assembly

    Range
    21832373..21841997
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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