U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

fabp1 fatty acid binding protein 1 [ Ictalurus punctatus (channel catfish) ]

Gene ID: 100528755, updated on 20-Aug-2024

Summary

Go to the top of the page Help
Gene symbol
fabp1
Gene description
fatty acid binding protein 1
See related
EnsemblRapid:ENSIPUG00020000673
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Ictalurus punctatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
Also known as
fabpl
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See fabp1 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_03 current Coco_2.0 (GCF_001660625.3) 5 NC_030420.2 (18110243..18111276)
101 previous assembly IpCoco_1.2 (GCF_001660625.2) 5 NC_030420.1 (16658000..16659033)

Chromosome 5 - NC_030420.2Genomic Context describing neighboring genes Neighboring gene zinc finger protein 366 Neighboring gene isotocin-neurophysin IT 2 Neighboring gene uncharacterized LOC124628188 Neighboring gene SET and MYND domain containing 1b Neighboring gene leucine zipper, putative tumor suppressor family member 3b

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Identification and characterization of full-length cDNAs in channel catfish (Ictalurus punctatus) and blue catfish (Ictalurus furcatus). Chen F, et al. PLoS One, 2010 Jul 12. PMID 20634964, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables fatty acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in fatty acid transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
fatty acid-binding protein, liver
Names
fatty acid-binding protein liver-type

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001201025.1 → NP_001187954.1  fatty acid-binding protein, liver

    See identical proteins and their annotated locations for NP_001187954.1

    Status: PROVISIONAL

    Source sequence(s)
    GU589402
    UniProtKB/TrEMBL
    E3TGB6
    Related
    ENSIPUP00020001282.1, ENSIPUT00020001473.1
    Conserved Domains (1) summary
    cl21528
    Location:3 → 128
    Lipocalin; Lipocalin / cytosolic fatty-acid binding protein family

RefSeqs of Annotated Genomes: GCF_001660625.3-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coco_2.0 Primary Assembly

Genomic

  1. NC_030420.2 Reference Coco_2.0 Primary Assembly

    Range
    18110243..18111276
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.