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polr2l RNA polymerase II, I and III subunit L [ Ictalurus punctatus (channel catfish) ]

Gene ID: 100528513, updated on 20-Aug-2024

Summary

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Gene symbol
polr2l
Gene description
RNA polymerase II, I and III subunit L
See related
EnsemblRapid:ENSIPUG00020028884
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Ictalurus punctatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
Also known as
rpab5
Orthologs
human zebrafish all
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Genomic context

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See polr2l in Genome Data Viewer
Location:
chromosome: 10
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_03 current Coco_2.0 (GCF_001660625.3) 10 NC_030425.2 (758021..758868, complement)
101 previous assembly IpCoco_1.2 (GCF_001660625.2) 10 NC_030425.1 (26931007..26931854, complement)

Chromosome 10 - NC_030425.2Genomic Context describing neighboring genes Neighboring gene cleavage and polyadenylation specificity factor subunit 7 Neighboring gene succinate dehydrogenase complex assembly factor 2 Neighboring gene uncharacterized LOC108271019 Neighboring gene diacylglycerol lipase, alpha

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Identification and characterization of full-length cDNAs in channel catfish (Ictalurus punctatus) and blue catfish (Ictalurus furcatus). Chen F, et al. PLoS One, 2010 Jul 12. PMID 20634964, Free PMC Article
  2. Efficient assembly and annotation of the transcriptome of catfish by RNA-Seq analysis of a doubled haploid homozygote. Liu S, et al. BMC Genomics, 2012 Nov 5. PMID 23127152, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-directed 5'-3' RNA polymerase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in tRNA transcription by RNA polymerase III IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transcription by RNA polymerase I IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of RNA polymerase I complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of RNA polymerase II, core complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of RNA polymerase III complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA-directed RNA polymerases I, II, and III subunit RPABC5
Names
DNA-directed RNA polymerases i II and III subunit rpabc5
RNA polymerase II subunit L
polymerase (RNA) II (DNA directed) polypeptide L
polymerase (RNA) II subunit L
NP_001187712.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001200783.2 → NP_001187712.1  DNA-directed RNA polymerases I, II, and III subunit RPABC5

    See identical proteins and their annotated locations for NP_001187712.1

    Status: PROVISIONAL

    Source sequence(s)
    GU589069
    UniProtKB/TrEMBL
    E3TFD5
    Related
    ENSIPUP00020054039.1, ENSIPUT00020069564.1
    Conserved Domains (1) summary
    pfam01194
    Location:1 → 59
    RNA_pol_N; RNA polymerases N / 8 kDa subunit

RefSeqs of Annotated Genomes: GCF_001660625.3-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coco_2.0 Primary Assembly

Genomic

  1. NC_030425.2 Reference Coco_2.0 Primary Assembly

    Range
    758021..758868 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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