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rida reactive intermediate imine deaminase A homolog [ Ictalurus punctatus (channel catfish) ]

Gene ID: 100528372, updated on 18-Sep-2024

Summary

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Gene symbol
rida
Gene description
reactive intermediate imine deaminase A homolog
See related
EnsemblRapid:ENSIPUG00020018377
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Ictalurus punctatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
Also known as
uk114
Orthologs
human zebrafish all
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Genomic context

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See rida in Genome Data Viewer
Location:
chromosome: 24
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2023_03 current Coco_2.0 (GCF_001660625.3) 24 NC_030439.2 (14697249..14701048)
101 previous assembly IpCoco_1.2 (GCF_001660625.2) 24 NC_030439.1 (12621667..12625466)

Chromosome 24 - NC_030439.2Genomic Context describing neighboring genes Neighboring gene 5'-nucleotidase, cytosolic IAa Neighboring gene serine/threonine kinase 3 (STE20 homolog, yeast) Neighboring gene uncharacterized LOC108256933 Neighboring gene ribosomal protein L30

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Identification and characterization of full-length cDNAs in channel catfish (Ictalurus punctatus) and blue catfish (Ictalurus furcatus). Chen F, et al. PLoS One, 2010 Jul 12. PMID 20634964, Free PMC Article
  2. Efficient assembly and annotation of the transcriptome of catfish by RNA-Seq analysis of a doubled haploid homozygote. Liu S, et al. BMC Genomics, 2012 Nov 5. PMID 23127152, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables deaminase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
2-iminobutanoate/2-iminopropanoate deaminase
Names
ribonuclease uk114
NP_001187571.1
XP_017309420.1
XP_017309422.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001200642.1 → NP_001187571.1  2-iminobutanoate/2-iminopropanoate deaminase

    See identical proteins and their annotated locations for NP_001187571.1

    Status: PROVISIONAL

    Source sequence(s)
    GU588879
    UniProtKB/TrEMBL
    E3TEU7
    Related
    ENSIPUP00020037061.1, ENSIPUT00020044092.1
    Conserved Domains (1) summary
    TIGR00004
    Location:6 → 129
    TIGR00004; reactive intermediate/imine deaminase

RefSeqs of Annotated Genomes: GCF_001660625.3-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coco_2.0 Primary Assembly

Genomic

  1. NC_030439.2 Reference Coco_2.0 Primary Assembly

    Range
    14697249..14701048
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017453931.3 → XP_017309420.1  2-iminobutanoate/2-iminopropanoate deaminase isoform X1

    UniProtKB/TrEMBL
    A0A2D0PWB2

  2. XM_017453933.3 → XP_017309422.1  2-iminobutanoate/2-iminopropanoate deaminase isoform X2

    UniProtKB/TrEMBL
    A0A2D0PTT6
    Related
    ENSIPUP00020037057.1, ENSIPUT00020044088.1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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