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sgcd sarcoglycan, delta (dystrophin-associated glycoprotein) [ Ictalurus punctatus (channel catfish) ]

Gene ID: 100528224, updated on 20-Aug-2024

Summary

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Gene symbol
sgcd
Gene description
sarcoglycan, delta (dystrophin-associated glycoprotein)
See related
EnsemblRapid:ENSIPUG00020025816
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Ictalurus punctatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
Orthologs
human zebrafish all
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Genomic context

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See sgcd in Genome Data Viewer
Location:
chromosome: 18
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2023_03 current Coco_2.0 (GCF_001660625.3) 18 NC_030433.2 (22139058..22304331, complement)
101 previous assembly IpCoco_1.2 (GCF_001660625.2) 18 NC_030433.1 (21566668..21726290, complement)

Chromosome 18 - NC_030433.2Genomic Context describing neighboring genes Neighboring gene rho GTPase-activating protein 7 Neighboring gene arginyl-tRNA synthetase 1 Neighboring gene mitochondrial ribosomal protein L22 Neighboring gene gem (nuclear organelle) associated protein 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Identification and characterization of full-length cDNAs in channel catfish (Ictalurus punctatus) and blue catfish (Ictalurus furcatus). Chen F, et al. PLoS One, 2010 Jul 12. PMID 20634964, Free PMC Article
  2. Efficient assembly and annotation of the transcriptome of catfish by RNA-Seq analysis of a doubled haploid homozygote. Liu S, et al. BMC Genomics, 2012 Nov 5. PMID 23127152, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
delta-sarcoglycan
Names
sarcoglycan delta

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001200494.1 → NP_001187423.1  delta-sarcoglycan

    See identical proteins and their annotated locations for NP_001187423.1

    Status: PROVISIONAL

    Source sequence(s)
    GU588667
    UniProtKB/TrEMBL
    E3TE87
    Related
    ENSIPUP00020049407.1, ENSIPUT00020062120.1
    Conserved Domains (1) summary
    pfam04790
    Location:28 → 251
    Sarcoglycan_1; Sarcoglycan complex subunit protein

RefSeqs of Annotated Genomes: GCF_001660625.3-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coco_2.0 Primary Assembly

Genomic

  1. NC_030433.2 Reference Coco_2.0 Primary Assembly

    Range
    22139058..22304331 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017491786.3 → XP_017347275.1  delta-sarcoglycan isoform X4

    UniProtKB/TrEMBL
    A0A2D0SX71
    Related
    ENSIPUP00020049412.1, ENSIPUT00020062125.1

  2. XM_017491788.3 → XP_017347277.1  delta-sarcoglycan isoform X4

    UniProtKB/TrEMBL
    A0A2D0SX71

  3. XM_047161586.2 → XP_047017542.1  delta-sarcoglycan isoform X2

    UniProtKB/TrEMBL
    A0A979FBJ3
    Related
    ENSIPUP00020049411.1, ENSIPUT00020062124.1

  4. XM_017491784.3 → XP_017347273.1  delta-sarcoglycan isoform X1

    UniProtKB/TrEMBL
    A0A2D0SX62
    Related
    ENSIPUP00020049410.1, ENSIPUT00020062123.1

  5. XM_053687616.1 → XP_053543591.1  delta-sarcoglycan isoform X3

    UniProtKB/TrEMBL
    A0A9F7RJQ0
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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