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DPPA5P3 developmental pluripotency associated 5 pseudogene 3 [ Homo sapiens (human) ]

Gene ID: 100528006, updated on 17-Sep-2024

Summary

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Official Symbol
DPPA5P3provided by HGNC
Official Full Name
developmental pluripotency associated 5 pseudogene 3provided by HGNC
Primary source
HGNC:HGNC:44688
See related
AllianceGenome:HGNC:44688
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See DPPA5P3 in Genome Data Viewer
Location:
10p15.1
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (6329059..6329477, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (6329185..6329603, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (6371021..6371439, complement)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:6242531-6243048 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:6243049-6243565 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:6244120-6244624 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2106 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2107 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:6246364-6246866 Neighboring gene PFKFB3 antisense RNA 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:6260567-6261068 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:6261069-6261568 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_13537 Neighboring gene MPRA-validated peak862 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2964 Neighboring gene MPRA-validated peak863 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2965 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2966 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:6321282-6322036 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2967 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr10:6340850-6342049 Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:6356348-6356848 Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:6356849-6357349 Neighboring gene syndecan binding protein pseudogene 1 Neighboring gene long intergenic non-protein coding RNA 2649 Neighboring gene CRISPRi-FlowFISH-validated PFKFB3 regulatory element GRCh37_chr10:6389972-6390472 Neighboring gene long intergenic non-protein coding RNA 2656 Neighboring gene uncharacterized LOC124902370 Neighboring gene NANOG hESC enhancer GRCh37_chr10:6452056-6452557 Neighboring gene protein kinase C theta

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_028003.2 

    Range
    101..519
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

    Range
    6329059..6329477 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060934.1 Alternate T2T-CHM13v2.0

    Range
    6329185..6329603 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Other Literature Sources
Molecular Biology Databases
Research Materials