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B3GAT2 beta-1,3-glucuronyltransferase 2 [ Sus scrofa (pig) ]

Gene ID: 100526195, updated on 17-Aug-2024

Summary

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Official Symbol
B3GAT2provided by VGNC
Official Full Name
beta-1,3-glucuronyltransferase 2provided by VGNC
Primary source
VGNC:VGNC:85720
See related
Ensembl:ENSSSCG00000026246
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Biased expression in ovary (RPKM 22.9), lung (RPKM 1.7) and 4 other tissues See more
Orthologs
human mouse all
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Genomic context

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See B3GAT2 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
6
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 1 NC_010443.5 (50941967..51041586, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 1 NC_010443.4 (57280055..57379177, complement)

Chromosome 1 - NC_010443.5Genomic Context describing neighboring genes Neighboring gene collagen type IX alpha 1 chain Neighboring gene family with sequence similarity 135 member A Neighboring gene small ArfGAP 1 Neighboring gene uncharacterized LOC110256957 Neighboring gene peroxiredoxin-2 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in chondroitin sulfate proteoglycan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 2
Names
beta-1,3-glucuronyltransferase 2 (glucuronosyltransferase S)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010443.5 Reference Sscrofa11.1 Primary Assembly

    Range
    50941967..51041586 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003121263.4 → XP_003121311.1  galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 2 isoform X1

    UniProtKB/TrEMBL
    A0A8D1WDU3, A0A8D1YBK7, I3LR31
    Related
    ENSSSCP00000026563.2, ENSSSCT00000024170.4
    Conserved Domains (1) summary
    cd00218
    Location:81 → 305
    GlcAT-I; Beta1,3-glucuronyltransferase I (GlcAT-I) is involved in the initial steps of proteoglycan synthesis

  2. XM_021089488.1 → XP_020945147.1  galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 2 isoform X2

    Conserved Domains (1) summary
    cd00218
    Location:81 → 246
    GlcAT-I; Beta1,3-glucuronyltransferase I (GlcAT-I) is involved in the initial steps of proteoglycan synthesis

  3. XM_021089491.1 → XP_020945150.1  galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 2 isoform X3

    Conserved Domains (1) summary
    cl11394
    Location:81 → 200
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
Nucleotide Protein
Heading Accession and Version

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