U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

CLEC18C C-type lectin domain family 18 member C [ Sus scrofa (pig) ]

Gene ID: 100525922, updated on 8-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
CLEC18C
Gene description
C-type lectin domain family 18 member C
See related
Ensembl:ENSSSCG00000002720
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Also known as
CLEC18A
Expression
Biased expression in kidney (RPKM 173.9) and mixtures (RPKM 31.5) See more
Orthologs
human all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See CLEC18C in Genome Data Viewer
Location:
chromosome: 6
Exon count:
13
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 6 NC_010448.4 (13265775..13280353)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 6 NC_010448.3 (13330500..13345092)

Chromosome 6 - NC_010448.4Genomic Context describing neighboring genes Neighboring gene pyruvate dehydrogenase phosphatase regulatory subunit Neighboring gene uncharacterized LOC102164581 Neighboring gene translation machinery-associated protein 7 pseudogene Neighboring gene uncharacterized LOC110260917 Neighboring gene RNA-binding Raly-like protein Neighboring gene exosome component 6

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
  2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

General protein information

Go to the top of the page Help
Preferred Names
LOW QUALITY PROTEIN: C-type lectin domain family 18 member C
Names
C-type lectin domain family 18 member A

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010448.4 Reference Sscrofa11.1 Primary Assembly

    Range
    13265775..13280353
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021097531.1 → XP_020953190.1  LOW QUALITY PROTEIN: C-type lectin domain family 18 member C

    UniProtKB/TrEMBL
    A0A480IXQ9, A0A4X1SRQ9, A0A8D0NJP3
    Related
    ENSSSCP00000030598.3, ENSSSCT00000034776.3
    Conserved Domains (2) summary
    cd00037
    Location:364 → 488
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain
    cd05380
    Location:104 → 237
    SCP_euk; SCP-like extracellular protein domain, as found mainly in eukaryotes. This family includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP ...
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.