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DNAJB6 DnaJ heat shock protein family (Hsp40) member B6 [ Sus scrofa (pig) ]

Gene ID: 100525669, updated on 17-Aug-2024

Summary

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Official Symbol
DNAJB6provided by VGNC
Official Full Name
DnaJ heat shock protein family (Hsp40) member B6provided by VGNC
Primary source
VGNC:VGNC:110294
See related
Ensembl:ENSSSCG00000033272
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in psoas major muscle (RPKM 17.2), longissimus dorsi muscle (RPKM 16.6) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See DNAJB6 in Genome Data Viewer
Location:
chromosome: 18
Exon count:
13
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 18 NC_010460.4 (1444737..1499904, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 18 NC_010460.3 (1404687..1481281, complement)

Chromosome 18 - NC_010460.4Genomic Context describing neighboring genes Neighboring gene non-SMC condensin II complex subunit G2 Neighboring gene protein tyrosine phosphatase receptor type N2 Neighboring gene uncharacterized LOC106506744 Neighboring gene ubiquitin protein ligase E3C

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. Porcine DNAJB6 promotes PCV2 replication via enhancing the formation of autophagy in host cells. Han C, et al. Vet Res, 2020 May 7. PMID 32381067, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Porcine DNAJB6 promotes PCV2 replication via enhancing the formation of autophagy in host cells.
    Title: Porcine DNAJB6 promotes PCV2 replication via enhancing the formation of autophagy in host cells.
Submit: New GeneRIF Correction

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATPase activator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables Hsp70 protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables unfolded protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chaperone-mediated protein folding IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of proteasomal ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein refolding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
dnaJ homolog subfamily B member 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010460.4 Reference Sscrofa11.1 Primary Assembly

    Range
    1444737..1499904 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021079274.1 → XP_020934933.1  dnaJ homolog subfamily B member 6 isoform X6

    UniProtKB/TrEMBL
    A0A480QAW8, A0A4X1U270, A0A5G2QP29, A0A8D0XXW9, A0A8D1GHT3
    Related
    ENSSSCP00000063838.2, ENSSSCT00000070621.2
    Conserved Domains (1) summary
    cl28246
    Location:3 → 136
    DnaJ; DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

  2. XM_021079276.1 → XP_020934935.1  dnaJ homolog subfamily B member 6 isoform X8

    UniProtKB/TrEMBL
    A0A8D0XXW9, A0A8D1GHT3
    Conserved Domains (1) summary
    COG0484
    Location:2 → 145
    DnaJ; DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

  3. XM_021079270.1 → XP_020934929.1  dnaJ homolog subfamily B member 6 isoform X2

    Conserved Domains (1) summary
    COG0484
    Location:2 → 106
    DnaJ; DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

  4. XM_021079275.1 → XP_020934934.1  dnaJ homolog subfamily B member 6 isoform X7

    UniProtKB/TrEMBL
    A0A480Q9B1, A0A8D0XXW9, A0A8D1GHT3, A0A8D1K306
    Related
    ENSSSCP00000064172.1, ENSSSCT00000090170.2
    Conserved Domains (1) summary
    COG0484
    Location:2 → 145
    DnaJ; DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

  5. XM_021079268.1 → XP_020934927.1  dnaJ homolog subfamily B member 6 isoform X1

    Conserved Domains (2) summary
    COG0484
    Location:2 → 106
    DnaJ; DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
    cl25800
    Location:358 → 482
    GGN; Gametogenetin

  6. XM_021079271.1 → XP_020934930.1  dnaJ homolog subfamily B member 6 isoform X3

    Conserved Domains (1) summary
    cl26386
    Location:258 → 381
    DNA_pol3_gamma3; DNA polymerase III subunits gamma and tau domain III

  7. XM_021079269.1 → XP_020934928.1  dnaJ homolog subfamily B member 6 isoform X1

    Conserved Domains (2) summary
    COG0484
    Location:2 → 106
    DnaJ; DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
    cl25800
    Location:358 → 482
    GGN; Gametogenetin

  8. XM_021079272.1 → XP_020934931.1  dnaJ homolog subfamily B member 6 isoform X4

    UniProtKB/TrEMBL
    A0A8D0XZU2, A0A8D1DIE3
    Conserved Domains (2) summary
    cl26386
    Location:246 → 369
    DNA_pol3_gamma3; DNA polymerase III subunits gamma and tau domain III
    cl28246
    Location:3 → 136
    DnaJ; DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

  9. XM_021079273.1 → XP_020934932.1  dnaJ homolog subfamily B member 6 isoform X5

    UniProtKB/TrEMBL
    A0A8D0RN40, A0A8D0XZU2
    Conserved Domains (2) summary
    COG0484
    Location:2 → 145
    DnaJ; DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
    cl26386
    Location:245 → 368
    DNA_pol3_gamma3; DNA polymerase III subunits gamma and tau domain III

RNA

  1. XR_001302272.2 RNA Sequence

Nucleotide Protein
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