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SYNJ1 synaptojanin 1 [ Sus scrofa (pig) ]

Gene ID: 100525664, updated on 17-Aug-2024

Summary

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Official Symbol
SYNJ1provided by VGNC
Official Full Name
synaptojanin 1provided by VGNC
Primary source
VGNC:VGNC:93668
See related
Ensembl:ENSSSCG00000012035
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in lung (RPKM 7.1), spleen (RPKM 6.3) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See SYNJ1 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
34
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 13 NC_010455.5 (196230101..196330512, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 13 NC_010455.4 (206240582..206342113, complement)

Chromosome 13 - NC_010455.5Genomic Context describing neighboring genes Neighboring gene cilia and flagella associated protein 298 Neighboring gene 40S ribosomal protein S24-like Neighboring gene PAX3 and PAX7 binding protein 1 Neighboring gene uncharacterized LOC106505849 Neighboring gene exosomal polycystin 1 interacting protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in brain development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in phosphatidylinositol dephosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in synaptic vesicle endocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in perinuclear region of cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in presynapse IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
synaptojanin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010455.5 Reference Sscrofa11.1 Primary Assembly

    Range
    196230101..196330512 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013982569.2 → XP_013838023.2  synaptojanin-1 isoform X21

    UniProtKB/TrEMBL
    A0A8D1L0K7
    Conserved Domains (4) summary
    cd09098
    Location:572 → 907
    INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
    pfam08952
    Location:906 → 1047
    DUF1866; Domain of unknown function (DUF1866)
    cl26464
    Location:1101 → 1502
    Atrophin-1; Atrophin-1 family
    cl27434
    Location:73 → 519
    Syja_N; SacI homology domain

  2. XM_021070927.1 → XP_020926586.1  synaptojanin-1 isoform X16

    UniProtKB/TrEMBL
    A0A8D0ZMQ7
    Conserved Domains (4) summary
    cd09098
    Location:572 → 907
    INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
    pfam08952
    Location:906 → 1047
    DUF1866; Domain of unknown function (DUF1866)
    cl26386
    Location:1092 → 1299
    DNA_pol3_gamma3; DNA polymerase III subunits gamma and tau domain III
    cl27434
    Location:73 → 519
    Syja_N; SacI homology domain

  3. XM_013982570.2 → XP_013838024.2  synaptojanin-1 isoform X22

    UniProtKB/TrEMBL
    A0A287B624
    Related
    ENSSSCP00000051758.2, ENSSSCT00000060074.2
    Conserved Domains (4) summary
    cd09098
    Location:572 → 907
    INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
    pfam08952
    Location:906 → 1047
    DUF1866; Domain of unknown function (DUF1866)
    cl26464
    Location:1093 → 1486
    Atrophin-1; Atrophin-1 family
    cl27434
    Location:73 → 519
    Syja_N; SacI homology domain

  4. XM_013982572.2 → XP_013838026.2  synaptojanin-1 isoform X14

    UniProtKB/TrEMBL
    A0A8D0ZMQ7
    Conserved Domains (4) summary
    cd09098
    Location:572 → 907
    INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
    pfam08952
    Location:906 → 1047
    DUF1866; Domain of unknown function (DUF1866)
    cl26464
    Location:1093 → 1313
    Atrophin-1; Atrophin-1 family
    cl27434
    Location:73 → 519
    Syja_N; SacI homology domain

  5. XM_013982571.2 → XP_013838025.2  synaptojanin-1 isoform X5

    UniProtKB/TrEMBL
    A0A8D0ZMP8
    Conserved Domains (4) summary
    cd09098
    Location:567 → 902
    INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
    pfam08952
    Location:901 → 1042
    DUF1866; Domain of unknown function (DUF1866)
    cl26464
    Location:1096 → 1455
    Atrophin-1; Atrophin-1 family
    cl27434
    Location:73 → 522
    Syja_N; SacI homology domain

  6. XM_013982563.2 → XP_013838017.2  synaptojanin-1 isoform X4

    UniProtKB/TrEMBL
    A0A8D0ZMP8
    Conserved Domains (4) summary
    cd09098
    Location:575 → 910
    INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
    pfam08952
    Location:909 → 1050
    DUF1866; Domain of unknown function (DUF1866)
    cl26464
    Location:1104 → 1463
    Atrophin-1; Atrophin-1 family
    cl27434
    Location:73 → 522
    Syja_N; SacI homology domain

  7. XM_013982561.2 → XP_013838015.2  synaptojanin-1 isoform X3

    UniProtKB/TrEMBL
    A0A287B624
    Conserved Domains (4) summary
    cd09098
    Location:575 → 910
    INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
    pfam08952
    Location:909 → 1050
    DUF1866; Domain of unknown function (DUF1866)
    cl26464
    Location:1103 → 1476
    Atrophin-1; Atrophin-1 family
    cl27434
    Location:73 → 522
    Syja_N; SacI homology domain

  8. XM_013982560.2 → XP_013838014.2  synaptojanin-1 isoform X2

    UniProtKB/TrEMBL
    A0A287B624
    Conserved Domains (4) summary
    cd09098
    Location:575 → 910
    INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
    pfam08952
    Location:909 → 1050
    DUF1866; Domain of unknown function (DUF1866)
    cl26464
    Location:1096 → 1489
    Atrophin-1; Atrophin-1 family
    cl27434
    Location:73 → 522
    Syja_N; SacI homology domain

  9. XM_013982568.2 → XP_013838022.2  synaptojanin-1 isoform X13

    UniProtKB/TrEMBL
    A0A8D0ZMQ7
    Conserved Domains (4) summary
    cd09098
    Location:575 → 910
    INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
    pfam08952
    Location:909 → 1050
    DUF1866; Domain of unknown function (DUF1866)
    cl26464
    Location:1096 → 1316
    Atrophin-1; Atrophin-1 family
    cl27434
    Location:73 → 522
    Syja_N; SacI homology domain

  10. XM_013982558.2 → XP_013838012.2  synaptojanin-1 isoform X1

    UniProtKB/TrEMBL
    A0A8D1L0K7
    Conserved Domains (4) summary
    cd09098
    Location:575 → 910
    INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
    pfam08952
    Location:909 → 1050
    DUF1866; Domain of unknown function (DUF1866)
    cl26464
    Location:1104 → 1505
    Atrophin-1; Atrophin-1 family
    cl27434
    Location:73 → 522
    Syja_N; SacI homology domain

  11. XM_013982564.2 → XP_013838018.2  synaptojanin-1 isoform X9

    UniProtKB/TrEMBL
    A0A8D0ZN26, A0A8D1MYR4
    Conserved Domains (4) summary
    cd09098
    Location:575 → 910
    INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
    pfam08952
    Location:909 → 1050
    DUF1866; Domain of unknown function (DUF1866)
    cl26464
    Location:1096 → 1332
    Atrophin-1; Atrophin-1 family
    cl27434
    Location:73 → 522
    Syja_N; SacI homology domain

  12. XM_021070923.1 → XP_020926582.1  synaptojanin-1 isoform X8

    UniProtKB/TrEMBL
    A0A8D0ZMP8
    Conserved Domains (4) summary
    cd09098
    Location:528 → 863
    INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
    pfam08952
    Location:862 → 1003
    DUF1866; Domain of unknown function (DUF1866)
    cl26464
    Location:1057 → 1416
    Atrophin-1; Atrophin-1 family
    cl27434
    Location:34 → 483
    Syja_N; SacI homology domain

  13. XM_021070921.1 → XP_020926580.1  synaptojanin-1 isoform X6

    UniProtKB/TrEMBL
    A0A8D0ZMP8
    Conserved Domains (4) summary
    cd09098
    Location:564 → 899
    INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
    pfam08952
    Location:898 → 1039
    DUF1866; Domain of unknown function (DUF1866)
    cl26464
    Location:1093 → 1452
    Atrophin-1; Atrophin-1 family
    cl27434
    Location:73 → 519
    Syja_N; SacI homology domain

  14. XM_021070926.1 → XP_020926585.1  synaptojanin-1 isoform X15

    UniProtKB/TrEMBL
    A0A8D0ZMQ7
    Conserved Domains (4) summary
    cd09098
    Location:572 → 907
    INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
    pfam08952
    Location:906 → 1047
    DUF1866; Domain of unknown function (DUF1866)
    cl26464
    Location:1093 → 1341
    Atrophin-1; Atrophin-1 family
    cl27434
    Location:73 → 519
    Syja_N; SacI homology domain

  15. XM_021070925.1 → XP_020926584.1  synaptojanin-1 isoform X12

    UniProtKB/TrEMBL
    A0A8D1I147
    Conserved Domains (4) summary
    cd09098
    Location:572 → 907
    INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
    pfam08952
    Location:906 → 1047
    DUF1866; Domain of unknown function (DUF1866)
    cl26464
    Location:1093 → 1356
    Atrophin-1; Atrophin-1 family
    cl27434
    Location:73 → 519
    Syja_N; SacI homology domain

  16. XM_021070924.1 → XP_020926583.1  synaptojanin-1 isoform X11

    UniProtKB/TrEMBL
    A0A8D0ZN26, A0A8D1MYR4
    Conserved Domains (4) summary
    cd09098
    Location:572 → 907
    INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
    pfam08952
    Location:906 → 1047
    DUF1866; Domain of unknown function (DUF1866)
    cl26464
    Location:1093 → 1329
    Atrophin-1; Atrophin-1 family
    cl27434
    Location:73 → 519
    Syja_N; SacI homology domain

  17. XM_021070933.1 → XP_020926592.1  synaptojanin-1 isoform X23

    UniProtKB/TrEMBL
    A0A8D0ZMQ7
    Conserved Domains (4) summary
    cd09098
    Location:567 → 902
    INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
    pfam08952
    Location:901 → 1042
    DUF1866; Domain of unknown function (DUF1866)
    cl26464
    Location:1088 → 1280
    Atrophin-1; Atrophin-1 family
    cl27434
    Location:73 → 522
    Syja_N; SacI homology domain

  18. XM_021070928.1 → XP_020926587.1  synaptojanin-1 isoform X17

    UniProtKB/TrEMBL
    A0A8D0ZMQ7
    Related
    ENSSSCP00000074750.1, ENSSSCT00000094870.1
    Conserved Domains (4) summary
    cd09098
    Location:575 → 910
    INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
    pfam08952
    Location:909 → 1050
    DUF1866; Domain of unknown function (DUF1866)
    cl26464
    Location:1096 → 1288
    Atrophin-1; Atrophin-1 family
    cl27434
    Location:73 → 522
    Syja_N; SacI homology domain

  19. XM_013982566.2 → XP_013838020.2  synaptojanin-1 isoform X10

    UniProtKB/TrEMBL
    A0A8D1I147
    Conserved Domains (4) summary
    cd09098
    Location:575 → 910
    INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
    pfam08952
    Location:909 → 1050
    DUF1866; Domain of unknown function (DUF1866)
    cl26464
    Location:1096 → 1359
    Atrophin-1; Atrophin-1 family
    cl27434
    Location:73 → 522
    Syja_N; SacI homology domain

  20. XM_021070922.1 → XP_020926581.1  synaptojanin-1 isoform X7

    UniProtKB/TrEMBL
    A0A8D0ZMP8
    Related
    ENSSSCP00000075472.1, ENSSSCT00000092982.1
    Conserved Domains (4) summary
    cd09098
    Location:533 → 868
    INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
    pfam08952
    Location:867 → 1008
    DUF1866; Domain of unknown function (DUF1866)
    cl26464
    Location:1062 → 1421
    Atrophin-1; Atrophin-1 family
    cl27434
    Location:34 → 480
    Syja_N; SacI homology domain

  21. XM_021070932.1 → XP_020926591.1  synaptojanin-1 isoform X20

    UniProtKB/TrEMBL
    A0A287BSN1, A0A8D0ZMQ7
    Related
    ENSSSCP00000059529.3, ENSSSCT00000037896.3
    Conserved Domains (4) summary
    cd09098
    Location:533 → 868
    INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
    pfam08952
    Location:867 → 1008
    DUF1866; Domain of unknown function (DUF1866)
    cl26464
    Location:1054 → 1302
    Atrophin-1; Atrophin-1 family
    cl27434
    Location:34 → 480
    Syja_N; SacI homology domain

  22. XM_021070929.1 → XP_020926588.1  synaptojanin-1 isoform X18

    UniProtKB/TrEMBL
    A0A286ZYK1, A0A8D0ZN26, A0A8D1MYR4
    Related
    ENSSSCP00000036587.3, ENSSSCT00000051945.3
    Conserved Domains (4) summary
    cd09098
    Location:533 → 868
    INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
    pfam08952
    Location:867 → 1008
    DUF1866; Domain of unknown function (DUF1866)
    cl26464
    Location:1054 → 1290
    Atrophin-1; Atrophin-1 family
    cl27434
    Location:34 → 480
    Syja_N; SacI homology domain

  23. XM_021070930.1 → XP_020926589.1  synaptojanin-1 isoform X19

    UniProtKB/TrEMBL
    A0A8D1I147
    Conserved Domains (4) summary
    cd09098
    Location:533 → 868
    INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
    pfam08952
    Location:867 → 1008
    DUF1866; Domain of unknown function (DUF1866)
    cl26464
    Location:1054 → 1317
    Atrophin-1; Atrophin-1 family
    cl27434
    Location:34 → 480
    Syja_N; SacI homology domain
Nucleotide Protein
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