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MRPS7 mitochondrial ribosomal protein S7 [ Sus scrofa (pig) ]

Gene ID: 100525357, updated on 17-Aug-2024

Summary

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Official Symbol
MRPS7provided by VGNC
Official Full Name
mitochondrial ribosomal protein S7provided by VGNC
Primary source
VGNC:VGNC:90400
See related
Ensembl:ENSSSCG00000035134
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in heart (RPKM 27.7), kidney (RPKM 23.7) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See MRPS7 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
5
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 12 NC_010454.4 (6052109..6055669, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 12 NC_010454.3 (5813908..5817178)

Chromosome 12 - NC_010454.4Genomic Context describing neighboring genes Neighboring gene 40S ribosomal protein S3a-like Neighboring gene uncharacterized LOC102165522 Neighboring gene solute carrier family 25 member 19 Neighboring gene MIF4G domain containing Neighboring gene golgi associated, gamma adaptin ear containing, ARF binding protein 3 Neighboring gene DNA-directed RNA polymerases I, II, and III subunit RPABC4 pseudogene Neighboring gene nucleoporin 85 Neighboring gene small ubiquitin like modifier 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
  2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables rRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ribosomal small subunit assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
28S ribosomal protein S7, mitochondrial

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010454.4 Reference Sscrofa11.1 Primary Assembly

    Range
    6052109..6055669 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003131206.5 → XP_003131254.1  28S ribosomal protein S7, mitochondrial

    See identical proteins and their annotated locations for XP_003131254.1

    UniProtKB/TrEMBL
    A0A286ZJ25, A0A4X1V4T6, A0A8D0V630, A0A8D1CVB5
    Related
    ENSSSCP00000031553.1, ENSSSCT00000046031.2
    Conserved Domains (1) summary
    cd14870
    Location:35 → 240
    uS7_Mitochondria_Mammalian; Mammalian Mitochondrial homolog of Ribosomal Protein S7
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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