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A4GALT alpha 1,4-galactosyltransferase [ Sus scrofa (pig) ]

Gene ID: 100524987, updated on 17-Aug-2024

Summary

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Official Symbol
A4GALTprovided by VGNC
Official Full Name
alpha 1,4-galactosyltransferaseprovided by VGNC
Primary source
VGNC:VGNC:103211
See related
Ensembl:ENSSSCG00000026962
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Broad expression in heart (RPKM 49.7), subcutaneous adipose (RPKM 11.6) and 7 other tissues See more
Orthologs
human mouse all
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Genomic context

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See A4GALT in Genome Data Viewer
Location:
chromosome: 5
Exon count:
4
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 5 NC_010447.5 (6083793..6105921)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 5 NC_010447.4 (3541482..3562498)

Chromosome 5 - NC_010447.5Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110260620 Neighboring gene ADP ribosylation factor GTPase activating protein 3 Neighboring gene uncharacterized LOC102166296 Neighboring gene cytochrome b5 reductase 3 Neighboring gene DNA polymerase delta interacting protein 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables acetylglucosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lactosylceramide 4-alpha-galactosyltransferase
Names
alpha 1,4-galactosyltransferase (P blood group)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010447.5 Reference Sscrofa11.1 Primary Assembly

    Range
    6083793..6105921
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005663760.3 → XP_005663817.1  lactosylceramide 4-alpha-galactosyltransferase

    See identical proteins and their annotated locations for XP_005663817.1

    UniProtKB/TrEMBL
    A0A8D0MWM6, A0A8D1KT09, I3L755
    Related
    ENSSSCP00000059548.1, ENSSSCT00000061122.1
    Conserved Domains (2) summary
    pfam04572
    Location:233 → 355
    Gb3_synth; Alpha 1,4-glycosyltransferase conserved region
    cl19952
    Location:100 → 220
    Gly_transf_sug; Glycosyltransferase sugar-binding region containing DXD motif

  2. XM_021091425.1 → XP_020947084.1  lactosylceramide 4-alpha-galactosyltransferase

    UniProtKB/TrEMBL
    A0A8D0MWM6, A0A8D1KT09, I3L755
    Related
    ENSSSCP00000019859.1, ENSSSCT00000028726.4
    Conserved Domains (2) summary
    pfam04572
    Location:233 → 355
    Gb3_synth; Alpha 1,4-glycosyltransferase conserved region
    cl19952
    Location:100 → 220
    Gly_transf_sug; Glycosyltransferase sugar-binding region containing DXD motif
Nucleotide Protein Strain
Heading Accession and Version

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