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LFNG LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase [ Sus scrofa (pig) ]

Gene ID: 100524978, updated on 17-Aug-2024

Summary

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Official Symbol
LFNGprovided by VGNC
Official Full Name
LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferaseprovided by VGNC
Primary source
VGNC:VGNC:89690
See related
Ensembl:ENSSSCG00000007572
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in spleen (RPKM 8.4), lung (RPKM 6.5) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See LFNG in Genome Data Viewer
Location:
chromosome: 3
Exon count:
14
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 3 NC_010445.4 (1721044..1819426)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 3 NC_010445.3 (2208304..2267857, complement)

Chromosome 3 - NC_010445.4Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110259835 Neighboring gene uncharacterized LOC110259836 Neighboring gene carbohydrate sulfotransferase 12 Neighboring gene galectin-related inter-fiber protein Neighboring gene proline-rich protein 36-like Neighboring gene tweety family member 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
  2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in pattern specification process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of Notch signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-1,3-N-acetylglucosaminyltransferase lunatic fringe

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010445.4 Reference Sscrofa11.1 Primary Assembly

    Range
    1721044..1819426
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021085997.1 → XP_020941656.1  beta-1,3-N-acetylglucosaminyltransferase lunatic fringe

    UniProtKB/TrEMBL
    A0A4X1THV1, A0A4X1TJP9, F1RI57
    Conserved Domains (1) summary
    pfam02434
    Location:107 → 355
    Fringe; Fringe-like

  2. XM_021085995.1 → XP_020941654.1  beta-1,3-N-acetylglucosaminyltransferase lunatic fringe

    UniProtKB/TrEMBL
    A0A4X1THV1, A0A4X1TJP9, F1RI57
    Conserved Domains (1) summary
    pfam02434
    Location:107 → 355
    Fringe; Fringe-like

  3. XM_021085998.1 → XP_020941657.1  beta-1,3-N-acetylglucosaminyltransferase lunatic fringe

    UniProtKB/TrEMBL
    A0A4X1THV1, A0A4X1TJP9, F1RI57
    Conserved Domains (1) summary
    pfam02434
    Location:107 → 355
    Fringe; Fringe-like

  4. XM_021086000.1 → XP_020941659.1  beta-1,3-N-acetylglucosaminyltransferase lunatic fringe

    UniProtKB/TrEMBL
    A0A4X1THV1, A0A4X1TJP9, F1RI57
    Conserved Domains (1) summary
    pfam02434
    Location:107 → 355
    Fringe; Fringe-like

  5. XM_021085994.1 → XP_020941653.1  beta-1,3-N-acetylglucosaminyltransferase lunatic fringe

    UniProtKB/TrEMBL
    A0A4X1THV1, A0A4X1TJP9, F1RI57
    Conserved Domains (1) summary
    pfam02434
    Location:107 → 355
    Fringe; Fringe-like

  6. XM_021086001.1 → XP_020941660.1  beta-1,3-N-acetylglucosaminyltransferase lunatic fringe

    UniProtKB/TrEMBL
    A0A4X1THV1, A0A4X1TJP9, F1RI57
    Conserved Domains (1) summary
    pfam02434
    Location:107 → 355
    Fringe; Fringe-like

  7. XM_021085999.1 → XP_020941658.1  beta-1,3-N-acetylglucosaminyltransferase lunatic fringe

    UniProtKB/TrEMBL
    A0A4X1THV1, A0A4X1TJP9, F1RI57
    Related
    ENSSSCP00000008089.2, ENSSSCT00000008308.3
    Conserved Domains (1) summary
    pfam02434
    Location:107 → 355
    Fringe; Fringe-like
Nucleotide Protein
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