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SLC39A8 solute carrier family 39 member 8 [ Sus scrofa (pig) ]

Gene ID: 100524695, updated on 17-Aug-2024

Summary

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Official Symbol
SLC39A8provided by VGNC
Official Full Name
solute carrier family 39 member 8provided by VGNC
Primary source
VGNC:VGNC:93109
See related
Ensembl:ENSSSCG00000009169
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Broad expression in spleen (RPKM 34.0), kidney (RPKM 25.6) and 5 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 8
Exon count:
10
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 8 NC_010450.4 (118604852..118678115)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 8 NC_010450.3 (127753647..127825292, complement)

Chromosome 8 - NC_010450.4Genomic Context describing neighboring genes Neighboring gene mannosidase beta Neighboring gene nuclear factor kappa B subunit 1 Neighboring gene uncharacterized LOC110262181 Neighboring gene uncharacterized LOC110262182 Neighboring gene B cell scaffold protein with ankyrin repeats 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables zinc ion transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intracellular zinc ion homeostasis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in zinc ion import across plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc transporter ZIP8
Names
solute carrier family 39 (zinc transporter), member 8 tv2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010450.4 Reference Sscrofa11.1 Primary Assembly

    Range
    118604852..118678115
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021101718.1 → XP_020957377.1  zinc transporter ZIP8

    UniProtKB/TrEMBL
    A0A480EKF5, A0A8D0V689, A0A8D0YLS2, M3TYX7
    Conserved Domains (1) summary
    pfam02535
    Location:126 → 452
    Zip; ZIP Zinc transporter

  2. XM_021101717.1 → XP_020957376.1  zinc transporter ZIP8

    UniProtKB/TrEMBL
    A0A480EKF5, A0A8D0V689, A0A8D0YLS2, M3TYX7
    Conserved Domains (1) summary
    pfam02535
    Location:126 → 452
    Zip; ZIP Zinc transporter

  3. XM_013979001.2 → XP_013834455.1  zinc transporter ZIP8

    UniProtKB/TrEMBL
    A0A480EKF5, A0A8D0V689, A0A8D0YLS2, M3TYX7
    Related
    ENSSSCP00000038853.1, ENSSSCT00000040082.1
    Conserved Domains (1) summary
    pfam02535
    Location:126 → 452
    Zip; ZIP Zinc transporter
Nucleotide Protein Strain
Heading Accession and Version

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