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CNTFR ciliary neurotrophic factor receptor [ Sus scrofa (pig) ]

Gene ID: 100524518, updated on 17-Aug-2024

Summary

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Official Symbol
CNTFRprovided by VGNC
Official Full Name
ciliary neurotrophic factor receptorprovided by VGNC
Primary source
VGNC:VGNC:95975
See related
Ensembl:ENSSSCG00000010974
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in longissimus dorsi muscle (RPKM 13.8), psoas major muscle (RPKM 12.1) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See CNTFR in Genome Data Viewer
Location:
chromosome: 10
Exon count:
11
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 10 NC_010452.4 (32211809..32251412)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 10 NC_010452.3 (36352329..36392542)

Chromosome 10 - NC_010452.4Genomic Context describing neighboring genes Neighboring gene AT-rich interaction domain 3C Neighboring gene dynactin subunit 3 Neighboring gene ribonuclease P/MRP subunit p25 like Neighboring gene uncharacterized LOC110255674 Neighboring gene dynein axonemal intermediate chain 1 Neighboring gene energy homeostasis associated

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ciliary neurotrophic factor receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cytokine binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cytokine-mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of CNTFR-CLCF1 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of ciliary neurotrophic factor receptor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in external side of plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ciliary neurotrophic factor receptor subunit alpha

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010452.4 Reference Sscrofa11.1 Primary Assembly

    Range
    32211809..32251412
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021064676.1 → XP_020920335.1  ciliary neurotrophic factor receptor subunit alpha

    UniProtKB/TrEMBL
    A0A480KAN0, A0A480KG54, A0A4X1UV22, A0A8D0XC37, A0A8D1E8U0
    Conserved Domains (2) summary
    smart00408
    Location:39 → 96
    IGc2; Immunoglobulin C-2 Type
    cd00063
    Location:204 → 300
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...

  2. XM_003130672.6 → XP_003130720.2  ciliary neurotrophic factor receptor subunit alpha

    See identical proteins and their annotated locations for XP_003130720.2

    UniProtKB/TrEMBL
    A0A480KAN0, A0A480KG54, A0A4X1UV22, A0A8D0XC37, A0A8D1E8U0
    Conserved Domains (2) summary
    smart00408
    Location:39 → 96
    IGc2; Immunoglobulin C-2 Type
    cd00063
    Location:204 → 300
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...

  3. XM_003482804.4 → XP_003482852.1  ciliary neurotrophic factor receptor subunit alpha

    See identical proteins and their annotated locations for XP_003482852.1

    UniProtKB/TrEMBL
    A0A480KAN0, A0A480KG54, A0A4X1UV22, A0A8D0XC37, A0A8D1E8U0
    Related
    ENSSSCP00000011703.3, ENSSSCT00000012011.5
    Conserved Domains (2) summary
    smart00408
    Location:39 → 96
    IGc2; Immunoglobulin C-2 Type
    cd00063
    Location:204 → 300
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
Nucleotide Protein
Heading Accession and Version

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