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B3GNT2 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2 [ Sus scrofa (pig) ]

Gene ID: 100524195, updated on 17-Aug-2024

Summary

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Official Symbol
B3GNT2provided by VGNC
Official Full Name
UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2provided by VGNC
Primary source
VGNC:VGNC:85723
See related
Ensembl:ENSSSCG00000008374
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Broad expression in lung (RPKM 11.1), kidney (RPKM 9.7) and 6 other tissues See more
Orthologs
human mouse all
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Genomic context

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See B3GNT2 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
3
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 3 NC_010445.4 (79671393..79704049, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 3 NC_010445.3 (83442753..83475397, complement)

Chromosome 3 - NC_010445.4Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106508312 Neighboring gene uncharacterized LOC110260002 Neighboring gene non-histone chromosomal protein HMG-14 pseudogene Neighboring gene phosphatidylinositol N-acetylglucosaminyltransferase subunit P pseudogene Neighboring gene nucleoporin p54 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
  2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010445.4 Reference Sscrofa11.1 Primary Assembly

    Range
    79671393..79704049 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003125112.5 → XP_003125160.2  N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 2

    See identical proteins and their annotated locations for XP_003125160.2

    UniProtKB/TrEMBL
    A0A4X1WCS9, A0A8D0KIE3, A0A8D1DVG2, F1SIW5
    Related
    ENSSSCP00000063258.1, ENSSSCT00000079052.2
    Conserved Domains (1) summary
    cl21608
    Location:156 → 345
    Galactosyl_T; Galactosyltransferase

  2. XM_021087479.1 → XP_020943138.1  N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 2

    UniProtKB/TrEMBL
    A0A4X1WCS9, A0A8D0KIE3, A0A8D1DVG2, F1SIW5
    Related
    ENSSSCP00000008938.2, ENSSSCT00000009169.3
    Conserved Domains (1) summary
    cl21608
    Location:156 → 345
    Galactosyl_T; Galactosyltransferase
Nucleotide Protein
Heading Accession and Version

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