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ACOX3 acyl-CoA oxidase 3, pristanoyl [ Sus scrofa (pig) ]

Gene ID: 100523005, updated on 17-Aug-2024

Summary

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Official Symbol
ACOX3provided by VGNC
Official Full Name
acyl-CoA oxidase 3, pristanoylprovided by VGNC
Primary source
VGNC:VGNC:85022
See related
Ensembl:ENSSSCG00000008724
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in kidney (RPKM 8.0), liver (RPKM 6.2) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See ACOX3 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
21
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 8 NC_010450.4 (2716913..2756221)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 8 NC_010450.3 (4391443..4418723)

Chromosome 8 - NC_010450.4Genomic Context describing neighboring genes Neighboring gene carboxypeptidase Z Neighboring gene tRNA methyltransferase 44 homolog Neighboring gene HtrA serine peptidase 3 Neighboring gene SH3 domain and tetratricopeptide repeats 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables FAD binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables fatty acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables pristanoyl-CoA oxidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in fatty acid beta-oxidation using acyl-CoA oxidase IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lipid homeostasis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in peroxisome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
peroxisomal acyl-coenzyme A oxidase 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010450.4 Reference Sscrofa11.1 Primary Assembly

    Range
    2716913..2756221
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021100951.1 → XP_020956610.1  peroxisomal acyl-coenzyme A oxidase 3 isoform X1

    UniProtKB/TrEMBL
    A0A480VSI5, A0A5G2QLH9, A0A8D1PCC7
    Related
    ENSSSCP00000062930.2, ENSSSCT00000086938.2
    Conserved Domains (1) summary
    cd01150
    Location:24 → 701
    AXO; Peroxisomal acyl-CoA oxidase

  2. XM_021100953.1 → XP_020956612.1  peroxisomal acyl-coenzyme A oxidase 3 isoform X2

    UniProtKB/TrEMBL
    A0A287BF51, A0A480VSI5, A0A8D1PCC7
    Related
    ENSSSCP00000054952.1, ENSSSCT00000063782.2
    Conserved Domains (1) summary
    cd01150
    Location:24 → 677
    AXO; Peroxisomal acyl-CoA oxidase

  3. XM_021100952.1 → XP_020956611.1  peroxisomal acyl-coenzyme A oxidase 3 isoform X1

    UniProtKB/TrEMBL
    A0A480VSI5, A0A5G2QLH9, A0A8D1PCC7
    Related
    ENSSSCP00000065412.1, ENSSSCT00000069702.2
    Conserved Domains (1) summary
    cd01150
    Location:24 → 701
    AXO; Peroxisomal acyl-CoA oxidase

RNA

  1. XR_002346545.1 RNA Sequence

  2. XR_002346547.1 RNA Sequence

  3. XR_002346548.1 RNA Sequence

  4. XR_002346546.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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