U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SDF4 stromal cell derived factor 4 [ Sus scrofa (pig) ]

Gene ID: 100522934, updated on 17-Aug-2024

Summary

Go to the top of the page Help
Official Symbol
SDF4provided by VGNC
Official Full Name
stromal cell derived factor 4provided by VGNC
Primary source
VGNC:VGNC:92658
See related
Ensembl:ENSSSCG00000003332
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in ovary (RPKM 129.0), subcutaneous adipose (RPKM 103.3) and 8 other tissues See more
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See SDF4 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
8
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 6 NC_010448.4 (63529853..63539979, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 6 NC_010448.3 (57999040..58008413)

Chromosome 6 - NC_010448.4Genomic Context describing neighboring genes Neighboring gene TNF receptor superfamily member 18 Neighboring gene TNF receptor superfamily member 4 Neighboring gene uncharacterized LOC106509652 Neighboring gene beta-1,3-galactosyltransferase 6 Neighboring gene C1q and TNF related 12

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
  2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in calcium-ion regulated exocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
45 kDa calcium-binding protein

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010448.4 Reference Sscrofa11.1 Primary Assembly

    Range
    63529853..63539979 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021097430.1 → XP_020953089.1  45 kDa calcium-binding protein isoform X2

    UniProtKB/TrEMBL
    A0A481D2B2, A0A4X1W3C3, A0A8D1J6I9
    Related
    ENSSSCP00000035128.2, ENSSSCT00000050956.2
    Conserved Domains (1) summary
    cd16225
    Location:60 → 340
    EFh_CREC_cab45; EF-hand, calcium binding motif, found in 45 kDa calcium-binding protein (Cab45)

  2. XM_003356108.4 → XP_003356156.1  45 kDa calcium-binding protein isoform X1

    UniProtKB/TrEMBL
    A0A286ZSR6, A0A287ACL1, A0A4X1W9A1, A0A8D1CWC0
    Related
    ENSSSCP00000041737.1, ENSSSCT00000065513.2
    Conserved Domains (2) summary
    pfam13499
    Location:120 → 179
    EF-hand_7; EF-hand domain pair
    cl08302
    Location:119 → 178
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.