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CHML CHM like Rab escort protein [ Sus scrofa (pig) ]

Gene ID: 100521677, updated on 17-Aug-2024

Summary

Official Symbol
CHMLprovided by VGNC
Official Full Name
CHM like Rab escort proteinprovided by VGNC
Primary source
VGNC:VGNC:95911
See related
Ensembl:ENSSSCG00000031212
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in kidney (RPKM 2.9), lung (RPKM 2.5) and 8 other tissues See more
Orthologs
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Genomic context

See CHML in Genome Data Viewer
Location:
chromosome: 10
Exon count:
2
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 10 NC_010452.4 (11835472..11845833)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 10 NC_010452.3 (14057719..14062929)

Chromosome 10 - NC_010452.4Genomic Context describing neighboring genes Neighboring gene dispatched RND transporter family member 1 Neighboring gene WD repeat domain 64 Neighboring gene F-box only protein 27-like Neighboring gene gremlin 2, DAN family BMP antagonist

Genomic regions, transcripts, and products

Expression

  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

General gene information

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GDP-dissociation inhibitor activity IEA
Inferred from Electronic Annotation
more info
PubMed 
Process Evidence Code Pubs
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
PubMed 
involved_in protein geranylgeranylation IEA
Inferred from Electronic Annotation
more info
PubMed 
involved_in small GTPase-mediated signal transduction IEA
Inferred from Electronic Annotation
more info
PubMed 
involved_in vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
PubMed 
Component Evidence Code Pubs
part_of Rab-protein geranylgeranyltransferase complex IEA
Inferred from Electronic Annotation
more info
PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
PubMed 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
PubMed 

General protein information

Preferred Names
rab proteins geranylgeranyltransferase component A 2
Names
CHM like Rab escort protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010452.4 Reference Sscrofa11.1 Primary Assembly

    Range
    11835472..11845833
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021064370.1XP_020920029.1  rab proteins geranylgeranyltransferase component A 2

    UniProtKB/TrEMBL
    A0A286ZPQ2, A0A8D0NS11
    Related
    ENSSSCP00000033581.1, ENSSSCT00000041144.2
    Conserved Domains (1) summary
    cl21454
    Location:6523
    NADB_Rossmann; Rossmann-fold NAD(P)(+)-binding proteins