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CLPTM1L CLPTM1 like [ Sus scrofa (pig) ]

Gene ID: 100520811, updated on 17-Aug-2024

Summary

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Official Symbol
CLPTM1Lprovided by VGNC
Official Full Name
CLPTM1 likeprovided by VGNC
Primary source
VGNC:VGNC:86779
See related
Ensembl:ENSSSCG00000017119
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in spleen (RPKM 40.4), kidney (RPKM 34.4) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See CLPTM1L in Genome Data Viewer
Location:
chromosome: 16
Exon count:
16
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 16 NC_010458.4 (79237000..79248503)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 16 NC_010458.3 (85904744..85907064)

Chromosome 16 - NC_010458.4Genomic Context describing neighboring genes Neighboring gene lysophosphatidylcholine acyltransferase 1 Neighboring gene solute carrier family 6 member 3 Neighboring gene telomerase reverse transcriptase Neighboring gene solute carrier family 6 member 18

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in endomembrane system IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cleft lip and palate transmembrane protein 1-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010458.4 Reference Sscrofa11.1 Primary Assembly

    Range
    79237000..79248503
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021076732.1 → XP_020932391.1  cleft lip and palate transmembrane protein 1-like protein

    UniProtKB/TrEMBL
    A0A287B9L7, A0A4X1TLS4, F1S026
    Related
    ENSSSCP00000018136.3, ENSSSCT00000018637.3
    Conserved Domains (1) summary
    pfam05602
    Location:22 → 421
    CLPTM1; Cleft lip and palate transmembrane protein 1 (CLPTM1)

RNA

  1. XR_002339573.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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