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RAD54L2 RAD54 like 2 [ Sus scrofa (pig) ]

Gene ID: 100520639, updated on 17-Aug-2024

Summary

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Official Symbol
RAD54L2provided by VGNC
Official Full Name
RAD54 like 2provided by VGNC
Primary source
VGNC:VGNC:92061
See related
Ensembl:ENSSSCG00000011425
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in ovary (RPKM 4.5), lung (RPKM 4.2) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See RAD54L2 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
24
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 13 NC_010455.5 (33771783..33890567)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 13 NC_010455.4 (37107800..37124258, complement)

Chromosome 13 - NC_010455.5Genomic Context describing neighboring genes Neighboring gene DDB1 and CUL4 associated factor 1 Neighboring gene transcription initiation factor TFIID subunit 10 pseudogene Neighboring gene uncharacterized LOC110256236 Neighboring gene fatty acid-binding protein, heart pseudogene Neighboring gene testis expressed 264, ER-phagy receptor Neighboring gene glutamate metabotropic receptor 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP-dependent chromatin remodeler activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
helicase ARIP4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010455.5 Reference Sscrofa11.1 Primary Assembly

    Range
    33771783..33890567
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021068851.1 → XP_020924510.1  helicase ARIP4 isoform X1

    UniProtKB/TrEMBL
    A0A4X1SFE2, A0A8D0JIC4
    Related
    ENSSSCP00000012177.4, ENSSSCT00000012505.5
    Conserved Domains (2) summary
    COG0553
    Location:135 → 908
    HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
    cl26464
    Location:1107 → 1460
    Atrophin-1; Atrophin-1 family

  2. XM_021068850.1 → XP_020924509.1  helicase ARIP4 isoform X1

    UniProtKB/TrEMBL
    A0A4X1SFE2, A0A8D0JIC4
    Conserved Domains (2) summary
    COG0553
    Location:135 → 908
    HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
    cl26464
    Location:1107 → 1460
    Atrophin-1; Atrophin-1 family

  3. XM_021068853.1 → XP_020924512.1  helicase ARIP4 isoform X1

    UniProtKB/TrEMBL
    A0A4X1SFE2, A0A8D0JIC4
    Conserved Domains (2) summary
    COG0553
    Location:135 → 908
    HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
    cl26464
    Location:1107 → 1460
    Atrophin-1; Atrophin-1 family

  4. XM_021068854.1 → XP_020924513.1  helicase ARIP4 isoform X2

    Conserved Domains (2) summary
    COG0553
    Location:49 → 498
    HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
    cl26464
    Location:697 → 1050
    Atrophin-1; Atrophin-1 family
Nucleotide Protein
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