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PIP4K2C phosphatidylinositol-5-phosphate 4-kinase type 2 gamma [ Sus scrofa (pig) ]

Gene ID: 100520306, updated on 17-Aug-2024

Summary

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Official Symbol
PIP4K2Cprovided by VGNC
Official Full Name
phosphatidylinositol-5-phosphate 4-kinase type 2 gammaprovided by VGNC
Primary source
VGNC:VGNC:91455
See related
Ensembl:ENSSSCG00000000436
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Broad expression in kidney (RPKM 40.1), ovary (RPKM 15.5) and 5 other tissues See more
Orthologs
human mouse all
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Genomic context

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See PIP4K2C in Genome Data Viewer
Location:
chromosome: 5
Exon count:
10
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 5 NC_010447.5 (22854142..22867032)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 5 NC_010447.4 (24821711..24826063, complement)

Chromosome 5 - NC_010447.5Genomic Context describing neighboring genes Neighboring gene methyl-CpG binding domain protein 6 Neighboring gene dynactin subunit 2 Neighboring gene kinesin family member 5A Neighboring gene deltex E3 ubiquitin ligase 3 Neighboring gene Rho guanine nucleotide exchange factor 25

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
  2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phosphatidylinositol kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in phosphatidylinositol metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
phosphatidylinositol 5-phosphate 4-kinase type-2 gamma
Names
phosphatidylinositol-5-phosphate 4-kinase, type II, gamma

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010447.5 Reference Sscrofa11.1 Primary Assembly

    Range
    22854142..22867032
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021091877.1 → XP_020947536.1  phosphatidylinositol 5-phosphate 4-kinase type-2 gamma

    UniProtKB/TrEMBL
    A0A0B8RVL7, A0A480LMF6, A0A4X1W5Z8, A0A8D0RK49, A0A8D1B9P2, F1SKH6
    Conserved Domains (1) summary
    smart00330
    Location:72 → 420
    PIPKc; Phosphatidylinositol phosphate kinases

  2. XM_021091878.1 → XP_020947537.1  phosphatidylinositol 5-phosphate 4-kinase type-2 gamma

    UniProtKB/TrEMBL
    A0A0B8RVL7, A0A480LMF6, A0A4X1W5Z8, A0A8D0RK49, A0A8D1B9P2, F1SKH6
    Related
    ENSSSCP00000000464.5, ENSSSCT00000000471.5
    Conserved Domains (1) summary
    smart00330
    Location:72 → 420
    PIPKc; Phosphatidylinositol phosphate kinases
Nucleotide Protein Strain
Heading Accession and Version

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