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MYL6B myosin light chain 6B [ Sus scrofa (pig) ]

Gene ID: 100520244, updated on 8-Mar-2024

Summary

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Gene symbol
MYL6B
Gene description
myosin light chain 6B
See related
Ensembl:ENSSSCG00000063428
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Biased expression in longissimus dorsi muscle (RPKM 172.3), psoas major muscle (RPKM 57.4) and 2 other tissues See more
Orthologs
human mouse all
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Genomic context

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See MYL6B in Genome Data Viewer
Location:
chromosome: 5
Exon count:
9
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 5 NC_010447.5 (21554351..21558995)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 5 NC_010447.4 (23255205..23259847, complement)

Chromosome 5 - NC_010447.5Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106507497 Neighboring gene zinc finger CCCH-type containing 10 Neighboring gene extended synaptotagmin 1 Neighboring gene uncharacterized LOC106507496 Neighboring gene myosin light chain 6 Neighboring gene SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
  2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of muscle IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of myosin II complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
myosin light chain 6B
Names
myosin, light chain 6B, alkali, smooth muscle and non-muscle

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010447.5 Reference Sscrofa11.1 Primary Assembly

    Range
    21554351..21558995
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003126266.3 → XP_003126314.1  myosin light chain 6B

    See identical proteins and their annotated locations for XP_003126314.1

    UniProtKB/TrEMBL
    A0A4X1W3Q3, A0A4X1W943, A0A8D0ICC2, A0A8D0SL51, F1SLZ3, F1SM01
    Conserved Domains (1) summary
    cl25352
    Location:74 → 223
    EFh_PEF; The penta-EF hand (PEF) family

  2. XM_021092855.1 → XP_020948514.1  myosin light chain 6B

    UniProtKB/TrEMBL
    A0A4X1W3Q3, A0A4X1W943, A0A8D0ICC2, A0A8D0SL51, F1SLZ3, F1SM01
    Related
    ENSSSCP00000000401.3, ENSSSCT00000000407.4
    Conserved Domains (1) summary
    cl25352
    Location:74 → 223
    EFh_PEF; The penta-EF hand (PEF) family
Nucleotide Protein
Heading Accession and Version

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