U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

RTN4IP1 reticulon 4 interacting protein 1 [ Sus scrofa (pig) ]

Gene ID: 100519752, updated on 17-Aug-2024

Summary

Go to the top of the page Help
Official Symbol
RTN4IP1provided by VGNC
Official Full Name
reticulon 4 interacting protein 1provided by VGNC
Primary source
VGNC:VGNC:92503
See related
Ensembl:ENSSSCG00000004373
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in heart (RPKM 8.2), psoas major muscle (RPKM 6.0) and 8 other tissues See more
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See RTN4IP1 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
13
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 1 NC_010443.5 (72763453..72816450, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 1 NC_010443.4 (82062555..82112789, complement)

Chromosome 1 - NC_010443.5Genomic Context describing neighboring genes Neighboring gene PR/SET domain 1 Neighboring gene autophagy related 5 Neighboring gene uncharacterized LOC110259431 Neighboring gene crystallin beta-gamma domain containing 1 Neighboring gene uncharacterized LOC110260421 Neighboring gene glutaminyl-tRNA amidotransferase subunit QRSL1 Neighboring gene uncharacterized LOC100519934

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Comparative analysis of protein coding sequences from human, mouse and the domesticated pig. Jørgensen FG, et al. BMC Biol, 2005 Jan 28. PMID 15679890, Free PMC Article
  2. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
  3. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
reticulon-4-interacting protein 1, mitochondrial

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010443.5 Reference Sscrofa11.1 Primary Assembly

    Range
    72763453..72816450 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003121325.4 → XP_003121373.1  reticulon-4-interacting protein 1, mitochondrial isoform X1

    UniProtKB/TrEMBL
    A0A4X1VG46, A0A5K1VV69, A0A8D0K4C0
    Related
    ENSSSCP00000022960.2, ENSSSCT00000026870.4
    Conserved Domains (2) summary
    cd08248
    Location:43 → 394
    RTN4I1; Human Reticulon 4 Interacting Protein 1
    COG0604
    Location:43 → 395
    Qor; NADPH:quinone reductase or related Zn-dependent oxidoreductase [Energy production and conversion, General function prediction only]

  2. XM_021090552.1 → XP_020946211.1  reticulon-4-interacting protein 1, mitochondrial isoform X2

    Conserved Domains (1) summary
    cd08248
    Location:1 → 294
    RTN4I1; Human Reticulon 4 Interacting Protein 1

  3. XM_021090561.1 → XP_020946220.1  reticulon-4-interacting protein 1, mitochondrial isoform X2

    Conserved Domains (1) summary
    cd08248
    Location:1 → 294
    RTN4I1; Human Reticulon 4 Interacting Protein 1

RNA

  1. XR_002343682.1 RNA Sequence

  2. XR_002343677.1 RNA Sequence

  3. XR_002343670.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.