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LOC100519264 EF-hand calcium-binding domain-containing protein 1-like [ Sus scrofa (pig) ]

Gene ID: 100519264, updated on 16-Nov-2023

Summary

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Gene symbol
LOC100519264
Gene description
EF-hand calcium-binding domain-containing protein 1-like
See related
Ensembl:ENSSSCG00000015316
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in ovary (RPKM 1.6), kidney (RPKM 1.6) and 8 other tissues See more
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Genomic context

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See LOC100519264 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
6
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 9 NC_010451.4 (72452897..72469594, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 9 NC_010451.3 (79181553..79197991, complement)

Chromosome 9 - NC_010451.4Genomic Context describing neighboring genes Neighboring gene GATA zinc finger domain containing 1 Neighboring gene peroxisomal biogenesis factor 1 Neighboring gene RNA binding motif protein 48 Neighboring gene family with sequence similarity 133 member B Neighboring gene cyclin dependent kinase 6

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
EF-hand calcium-binding domain-containing protein 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010451.4 Reference Sscrofa11.1 Primary Assembly

    Range
    72452897..72469594 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003130144.5 → XP_003130192.1  EF-hand calcium-binding domain-containing protein 1-like isoform X2

    See identical proteins and their annotated locations for XP_003130192.1

    UniProtKB/TrEMBL
    A0A4X1U5E4, A0A8D1JMF8
    Conserved Domains (3) summary
    cd00051
    Location:104 → 175
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
    pfam13499
    Location:105 → 174
    EF-hand_7; EF-hand domain pair
    cl08302
    Location:71 → 130
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...

  2. XM_021102381.1 → XP_020958040.1  EF-hand calcium-binding domain-containing protein 1-like isoform X1

    UniProtKB/TrEMBL
    A0A4X1U5E8, A0A8D1JMF8
    Related
    ENSSSCP00000016243.3, ENSSSCT00000016689.5
    Conserved Domains (1) summary
    cl25352
    Location:68 → 177
    EFh_PEF; The penta-EF hand (PEF) family
Nucleotide Protein
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