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AFTPH aftiphilin [ Sus scrofa (pig) ]

Gene ID: 100518778, updated on 17-Aug-2024

Summary

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Official Symbol
AFTPHprovided by VGNC
Official Full Name
aftiphilinprovided by VGNC
Primary source
VGNC:VGNC:85173
See related
Ensembl:ENSSSCG00000008363
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in kidney (RPKM 20.0), spleen (RPKM 14.6) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See AFTPH in Genome Data Viewer
Location:
chromosome: 3
Exon count:
12
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 3 NC_010445.4 (77351872..77422854, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 3 NC_010445.3 (81192690..81262572, complement)

Chromosome 3 - NC_010445.4Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102160963 Neighboring gene SERTA domain containing 2 Neighboring gene galectin like Neighboring gene uncharacterized LOC110259999

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables clathrin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intracellular transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of AP-1 adaptor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in trans-Golgi network membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
aftiphilin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010445.4 Reference Sscrofa11.1 Primary Assembly

    Range
    77351872..77422854 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021087452.1 → XP_020943111.1  aftiphilin isoform X1

    UniProtKB/TrEMBL
    A0A4X1WC47, A0A8D0LS26, I3LNU3
    Conserved Domains (1) summary
    pfam15045
    Location:699 → 767
    Clathrin_bdg; Clathrin-binding box of Aftiphilin, vesicle trafficking

  2. XM_003481201.4 → XP_003481249.1  aftiphilin isoform X1

    UniProtKB/TrEMBL
    A0A4X1WC47, A0A8D0LS26, I3LNU3
    Related
    ENSSSCP00000025768.3, ENSSSCT00000022299.4
    Conserved Domains (1) summary
    pfam15045
    Location:699 → 767
    Clathrin_bdg; Clathrin-binding box of Aftiphilin, vesicle trafficking

  3. XM_021087453.1 → XP_020943112.1  aftiphilin isoform X1

    UniProtKB/TrEMBL
    A0A4X1WC47, A0A8D0LS26, I3LNU3
    Conserved Domains (1) summary
    pfam15045
    Location:699 → 767
    Clathrin_bdg; Clathrin-binding box of Aftiphilin, vesicle trafficking

  4. XM_003481200.4 → XP_003481248.1  aftiphilin isoform X2

    UniProtKB/TrEMBL
    A0A480THC9, A0A8D1XYN2, F1SIY7
    Related
    ENSSSCP00000008926.5, ENSSSCT00000009157.5
    Conserved Domains (1) summary
    pfam15045
    Location:699 → 767
    Clathrin_bdg; Clathrin-binding box of Aftiphilin, vesicle trafficking

RNA

  1. XR_302431.3 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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