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AMDHD2 amidohydrolase domain containing 2 [ Sus scrofa (pig) ]

Gene ID: 100518775, updated on 17-Aug-2024

Summary

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Official Symbol
AMDHD2provided by VGNC
Official Full Name
amidohydrolase domain containing 2provided by VGNC
Primary source
VGNC:VGNC:98864
See related
Ensembl:ENSSSCG00000008057
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in kidney (RPKM 19.9), spleen (RPKM 19.2) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See AMDHD2 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
11
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 3 NC_010445.4 (39523076..39532590, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 3 NC_010445.3 (42706973..42716475)

Chromosome 3 - NC_010445.4Genomic Context describing neighboring genes Neighboring gene potassium channel tetramerization domain containing 5 Neighboring gene 3-phosphoinositide dependent protein kinase 1 Neighboring gene 60S ribosomal protein L34 pseudogene Neighboring gene ATPase H+ transporting V0 subunit c Neighboring gene TBC1 domain family member 24

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables N-acetylglucosamine-6-phosphate deacetylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in N-acetylglucosamine catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
N-acetylglucosamine-6-phosphate deacetylase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010445.4 Reference Sscrofa11.1 Primary Assembly

    Range
    39523076..39532590 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013987849.2 → XP_013843303.1  N-acetylglucosamine-6-phosphate deacetylase isoform X3

    UniProtKB/TrEMBL
    A0A480ZRW5, A0A4X1VU31
    Related
    ENSSSCP00000060933.2, ENSSSCT00000079564.2
    Conserved Domains (1) summary
    cd00854
    Location:13 → 398
    NagA; N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate. This is the first committed step in the biosynthetic pathway to ...

  2. XM_013987848.2 → XP_013843302.1  N-acetylglucosamine-6-phosphate deacetylase isoform X1

    UniProtKB/TrEMBL
    A0A8D1TF18
    Conserved Domains (1) summary
    cd00854
    Location:13 → 380
    NagA; N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate. This is the first committed step in the biosynthetic pathway to ...

  3. XM_021086752.1 → XP_020942411.1  N-acetylglucosamine-6-phosphate deacetylase isoform X2

    UniProtKB/TrEMBL
    A0A480PYX7, A0A4X1VU31
    Conserved Domains (1) summary
    cd00854
    Location:13 → 422
    NagA; N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate. This is the first committed step in the biosynthetic pathway to ...
Nucleotide Protein
Heading Accession and Version

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