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MAN2B1 mannosidase alpha class 2B member 1 [ Sus scrofa (pig) ]

Gene ID: 100518647, updated on 17-Aug-2024

Summary

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Official Symbol
MAN2B1provided by VGNC
Official Full Name
mannosidase alpha class 2B member 1provided by VGNC
Primary source
VGNC:VGNC:100165
See related
Ensembl:ENSSSCG00000013720
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Broad expression in spleen (RPKM 128.0), lung (RPKM 60.8) and 7 other tissues See more
Orthologs
human mouse all
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Genomic context

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See MAN2B1 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
24
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 2 NC_010444.4 (66329051..66347051)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 2 NC_010444.3 (66706800..66724791)

Chromosome 2 - NC_010444.4Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100736972 Neighboring gene deoxyhypusine synthase Neighboring gene WD repeat domain 83 opposite strand Neighboring gene WD repeat domain 83 Neighboring gene zinc finger protein 791-like Neighboring gene zinc finger protein 709-like Neighboring gene zinc finger protein 709-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-mannosidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mannose metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in lysosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lysosomal alpha-mannosidase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010444.4 Reference Sscrofa11.1 Primary Assembly

    Range
    66329051..66347051
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003123314.4 → XP_003123362.2  lysosomal alpha-mannosidase isoform X2

    UniProtKB/TrEMBL
    K9J4R3
    Related
    ENSSSCP00000014590.4, ENSSSCT00000014994.5
    Conserved Domains (2) summary
    PLN02701
    Location:47 → 998
    PLN02701; alpha-mannosidase
    cd10810
    Location:64 → 342
    GH38N_AMII_LAM_like; N-terminal catalytic domain of lysosomal alpha-mannosidase and similar proteins; glycoside hydrolase family 38 (GH38)

  2. XM_013990604.2 → XP_013846058.2  lysosomal alpha-mannosidase isoform X1

    UniProtKB/TrEMBL
    K9J4R3
    Conserved Domains (2) summary
    PLN02701
    Location:47 → 1009
    PLN02701; alpha-mannosidase
    cd10810
    Location:64 → 342
    GH38N_AMII_LAM_like; N-terminal catalytic domain of lysosomal alpha-mannosidase and similar proteins; glycoside hydrolase family 38 (GH38)
Nucleotide Protein Strain
Heading Accession and Version

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