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XPO6 exportin 6 [ Sus scrofa (pig) ]

Gene ID: 100518364, updated on 17-Aug-2024

Summary

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Official Symbol
XPO6provided by VGNC
Official Full Name
exportin 6provided by VGNC
Primary source
VGNC:VGNC:95006
See related
Ensembl:ENSSSCG00000007812
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Broad expression in ovary (RPKM 69.3), spleen (RPKM 34.0) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See XPO6 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
24
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 3 NC_010445.4 (18772058..18880650)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 3 NC_010445.3 (19004241..19112483)

Chromosome 3 - NC_010445.4Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110259910 Neighboring gene uncharacterized LOC110259911 Neighboring gene SH3 domain binding kinase 1 Neighboring gene GSG1 like Neighboring gene 60S ribosomal protein L13 pseudogene Neighboring gene katanin interacting protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. Expression and function of exportin 6 in full-grown and growing porcine oocytes. Onuma A, et al. J Reprod Dev, 2019 Oct 23. PMID 31204365, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. exportin 6 affects the nuclear transport of actin and meiotic resumption in mammalian oocytes
    Title: Expression and function of exportin 6 in full-grown and growing porcine oocytes.
Submit: New GeneRIF Correction

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nuclear export signal receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables small GTPase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein export from nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
exportin-6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010445.4 Reference Sscrofa11.1 Primary Assembly

    Range
    18772058..18880650
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003124525.6 → XP_003124573.3  exportin-6

    UniProtKB/TrEMBL
    A0A286ZTA7, A0A480YUC9, A0A4X1UMS9, A0A8D0M7J4, A0A8D1YSJ4, F1RFG5
    Related
    ENSSSCP00000008341.2, ENSSSCT00000008560.5
    Conserved Domains (2) summary
    smart00913
    Location:31 → 96
    IBN_N; Importin-beta N-terminal domain
    pfam08389
    Location:103 → 253
    Xpo1; Exportin 1-like protein
Nucleotide Protein
Heading Accession and Version

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Research Materials