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PGGHG protein-glucosylgalactosylhydroxylysine glucosidase [ Sus scrofa (pig) ]

Gene ID: 100518005, updated on 17-Aug-2024

Summary

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Official Symbol
PGGHGprovided by VGNC
Official Full Name
protein-glucosylgalactosylhydroxylysine glucosidaseprovided by VGNC
Primary source
VGNC:VGNC:91349
See related
Ensembl:ENSSSCG00000025023
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Also known as
ATHL1
Expression
Ubiquitous expression in kidney (RPKM 15.3), ovary (RPKM 11.6) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See PGGHG in Genome Data Viewer
Location:
chromosome: 2
Exon count:
15
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 2 NC_010444.4 (99254..104898)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 2 NC_010444.3 (162118090..162125427, complement)

Chromosome 2 - NC_010444.4Genomic Context describing neighboring genes Neighboring gene COX8H protein Neighboring gene uncharacterized LOC110259203 Neighboring gene NLR family pyrin domain containing 6 Neighboring gene interferon induced transmembrane protein 5 Neighboring gene interferon-induced transmembrane protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables catalytic activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein-glucosylgalactosylhydroxylysine glucosidase
Names
ATH1, acid trehalase-like 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010444.4 Reference Sscrofa11.1 Primary Assembly

    Range
    99254..104898
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005655041.3 → XP_005655098.2  protein-glucosylgalactosylhydroxylysine glucosidase isoform X2

    UniProtKB/TrEMBL
    A0A4X1VY91
    Conserved Domains (1) summary
    COG1554
    Location:208 → 646
    ATH1; Trehalose and maltose hydrolase (possible phosphorylase) [Carbohydrate transport and metabolism]

  2. XM_021082533.1 → XP_020938192.1  protein-glucosylgalactosylhydroxylysine glucosidase isoform X3

    UniProtKB/TrEMBL
    A0A4X1VY91, A0A8D0SJS0
    Conserved Domains (1) summary
    COG1554
    Location:208 → 604
    ATH1; Trehalose and maltose hydrolase (possible phosphorylase) [Carbohydrate transport and metabolism]

  3. XM_021082532.1 → XP_020938191.1  protein-glucosylgalactosylhydroxylysine glucosidase isoform X1

    UniProtKB/TrEMBL
    A0A4X1VY91, F1RGC7
    Conserved Domains (1) summary
    COG1554
    Location:223 → 661
    ATH1; Trehalose and maltose hydrolase (possible phosphorylase) [Carbohydrate transport and metabolism]

  4. XM_003354417.4 → XP_003354465.2  protein-glucosylgalactosylhydroxylysine glucosidase isoform X2

    UniProtKB/TrEMBL
    A0A4X1VY91
    Conserved Domains (1) summary
    COG1554
    Location:208 → 646
    ATH1; Trehalose and maltose hydrolase (possible phosphorylase) [Carbohydrate transport and metabolism]

  5. XM_021082530.1 → XP_020938189.1  protein-glucosylgalactosylhydroxylysine glucosidase isoform X1

    UniProtKB/TrEMBL
    A0A4X1VY91, F1RGC7
    Related
    ENSSSCP00000015492.5, ENSSSCT00000015912.5
    Conserved Domains (1) summary
    COG1554
    Location:223 → 661
    ATH1; Trehalose and maltose hydrolase (possible phosphorylase) [Carbohydrate transport and metabolism]

  6. XM_013987654.2 → XP_013843108.2  protein-glucosylgalactosylhydroxylysine glucosidase isoform X3

    UniProtKB/TrEMBL
    A0A4X1VY91, A0A8D0SJS0
    Conserved Domains (1) summary
    COG1554
    Location:208 → 604
    ATH1; Trehalose and maltose hydrolase (possible phosphorylase) [Carbohydrate transport and metabolism]

  7. XM_021082531.1 → XP_020938190.1  protein-glucosylgalactosylhydroxylysine glucosidase isoform X1

    UniProtKB/TrEMBL
    A0A4X1VY91, F1RGC7
    Conserved Domains (1) summary
    COG1554
    Location:223 → 661
    ATH1; Trehalose and maltose hydrolase (possible phosphorylase) [Carbohydrate transport and metabolism]
Nucleotide Protein
Heading Accession and Version

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