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SLC35A1 solute carrier family 35 member A1 [ Sus scrofa (pig) ]

Gene ID: 100517983, updated on 17-Aug-2024

Summary

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Official Symbol
SLC35A1provided by VGNC
Official Full Name
solute carrier family 35 member A1provided by VGNC
Primary source
VGNC:VGNC:93067
See related
Ensembl:ENSSSCG00000004304
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in ovary (RPKM 18.9), kidney (RPKM 15.8) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See SLC35A1 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
9
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 1 NC_010443.5 (55859619..55895785)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 1 NC_010443.4 (62552706..62588752)

Chromosome 1 - NC_010443.5Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110260320 Neighboring gene cilia and flagella associated protein 206 Neighboring gene arginyl-tRNA synthetase 2, mitochondrial Neighboring gene origin recognition complex subunit 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables pyrimidine nucleotide-sugar transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in pyrimidine nucleotide-sugar transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
CMP-sialic acid transporter
Names
solute carrier family 35 (CMP-sialic acid transporter), member A1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010443.5 Reference Sscrofa11.1 Primary Assembly

    Range
    55859619..55895785
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003353254.5 → XP_003353302.1  CMP-sialic acid transporter isoform X1

    UniProtKB/TrEMBL
    A0A480WWT0, A0A8D1ZF04, F1S0G0
    Related
    ENSSSCP00000004648.5, ENSSSCT00000004759.5
    Conserved Domains (2) summary
    TIGR00803
    Location:90 → 313
    nst; UDP-galactose transporter
    pfam04142
    Location:10 → 314
    Nuc_sug_transp; Nucleotide-sugar transporter

  2. XM_021089797.1 → XP_020945456.1  CMP-sialic acid transporter isoform X2

    UniProtKB/TrEMBL
    A0A0B8RS99, A0A4X1VL88
    Conserved Domains (1) summary
    pfam04142
    Location:6 → 257
    Nuc_sug_transp; Nucleotide-sugar transporter
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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