U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

CD200R1L CD200 receptor 1 like [ Sus scrofa (pig) ]

Gene ID: 100516043, updated on 8-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
CD200R1L
Gene description
CD200 receptor 1 like
See related
Ensembl:ENSSSCG00000044512
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Biased expression in spleen (RPKM 3.0), mixtures (RPKM 0.4) and 2 other tissues See more
Orthologs
human all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See CD200R1L in Genome Data Viewer
Location:
chromosome: 13
Exon count:
8
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 13 NC_010455.5 (147024541..147070345)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 13 NC_010455.4 (156605746..156667162)

Chromosome 13 - NC_010455.5Genomic Context describing neighboring genes Neighboring gene GTP binding protein 8 Neighboring gene nucleolus and neural progenitor protein Neighboring gene CD200 receptor 1 Neighboring gene uncharacterized LOC106505808 Neighboring gene uncharacterized LOC102163929

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables signaling receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of neuroinflammatory response IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in external side of plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
cell surface glycoprotein CD200 receptor 2

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001244415.1 → NP_001231344.1  cell surface glycoprotein CD200 receptor 2 precursor

    Status: PROVISIONAL

    Source sequence(s)
    AK232200
    UniProtKB/TrEMBL
    A0A4X1SUG9, A0A8D0LH50, A0A8D0MJN7, A0A8D0SD66, A0A8D1FDD3, K7GLQ4
    Related
    ENSSSCP00000028786.2, ENSSSCT00000033030.3
    Conserved Domains (1) summary
    cl11960
    Location:164 → 223
    Ig; Immunoglobulin domain

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010455.5 Reference Sscrofa11.1 Primary Assembly

    Range
    147024541..147070345
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021068428.1 → XP_020924087.1  cell surface glycoprotein CD200 receptor 2 isoform X3

    UniProtKB/TrEMBL
    A0A480SFM3
    Conserved Domains (1) summary
    cl11960
    Location:135 → 194
    Ig; Immunoglobulin domain

  2. XM_021068426.1 → XP_020924085.1  cell surface glycoprotein CD200 receptor 2 isoform X1

    UniProtKB/TrEMBL
    A0A4X1SUG9, A0A8D0MJN7, A0A8D0SD66
    Conserved Domains (1) summary
    cl11960
    Location:164 → 223
    Ig; Immunoglobulin domain

  3. XM_021068427.1 → XP_020924086.1  cell surface glycoprotein CD200 receptor 2 isoform X2

    Conserved Domains (1) summary
    cl11960
    Location:164 → 223
    Ig; Immunoglobulin domain

RNA

  1. XR_002337486.1 RNA Sequence

  2. XR_002337482.1 RNA Sequence

  3. XR_002337483.1 RNA Sequence

  4. XR_002337484.1 RNA Sequence

  5. XR_002337487.1 RNA Sequence

  6. XR_002337485.1 RNA Sequence

  7. XR_002337488.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.