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ATXN2L ataxin 2 like [ Sus scrofa (pig) ]

Gene ID: 100515946, updated on 17-Aug-2024

Summary

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Official Symbol
ATXN2Lprovided by VGNC
Official Full Name
ataxin 2 likeprovided by VGNC
Primary source
VGNC:VGNC:85691
See related
Ensembl:ENSSSCG00000021845
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in ovary (RPKM 22.6), spleen (RPKM 22.0) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See ATXN2L in Genome Data Viewer
Location:
chromosome: 3
Exon count:
24
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 3 NC_010445.4 (18506082..18519060)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 3 NC_010445.3 (18691387..18704357)

Chromosome 3 - NC_010445.4Genomic Context describing neighboring genes Neighboring gene apolipoprotein B receptor Neighboring gene CLN3 lysosomal/endosomal transmembrane protein, battenin Neighboring gene eukaryotic translation initiation factor 3 subunit C Neighboring gene uncharacterized LOC100516669 Neighboring gene Tu translation elongation factor, mitochondrial

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in stress granule assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasmic stress granule IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ataxin-2-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010445.4 Reference Sscrofa11.1 Primary Assembly

    Range
    18506082..18519060
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003354562.4 → XP_003354610.2  ataxin-2-like protein isoform X7

    UniProtKB/TrEMBL
    A0A8D1F4A9
    Conserved Domains (4) summary
    pfam06741
    Location:265 → 327
    LsmAD; LsmAD domain
    pfam14438
    Location:124 → 197
    SM-ATX; Ataxin 2 SM domain
    cl25764
    Location:752 → 956
    PAT1; Topoisomerase II-associated protein PAT1
    cl26464
    Location:426 → 942
    Atrophin-1; Atrophin-1 family

  2. XM_005662049.3 → XP_005662106.2  ataxin-2-like protein isoform X3

    UniProtKB/TrEMBL
    A0A480HDK5, A0A480HHK8, A0A8D1F5Q5
    Related
    ENSSSCP00000047992.2, ENSSSCT00000037339.3
    Conserved Domains (5) summary
    pfam06741
    Location:265 → 327
    LsmAD; LsmAD domain
    pfam14438
    Location:124 → 197
    SM-ATX; Ataxin 2 SM domain
    cl25764
    Location:752 → 956
    PAT1; Topoisomerase II-associated protein PAT1
    cl26386
    Location:870 → 1045
    DNA_pol3_gamma3; DNA polymerase III subunits gamma and tau domain III
    cl26464
    Location:426 → 942
    Atrophin-1; Atrophin-1 family

  3. XM_021088041.1 → XP_020943700.1  ataxin-2-like protein isoform X1

    UniProtKB/TrEMBL
    A0A8D1TMV7, A0A8D1YLS4
    Conserved Domains (5) summary
    pfam06741
    Location:265 → 327
    LsmAD; LsmAD domain
    pfam14438
    Location:124 → 197
    SM-ATX; Ataxin 2 SM domain
    cl25764
    Location:783 → 987
    PAT1; Topoisomerase II-associated protein PAT1
    cl26386
    Location:901 → 1076
    DNA_pol3_gamma3; DNA polymerase III subunits gamma and tau domain III
    cl26464
    Location:426 → 973
    Atrophin-1; Atrophin-1 family

  4. XM_003354561.4 → XP_003354609.2  ataxin-2-like protein isoform X6

    UniProtKB/TrEMBL
    A0A8D1F4A9
    Related
    ENSSSCP00000043547.2, ENSSSCT00000063630.3
    Conserved Domains (3) summary
    pfam06741
    Location:265 → 327
    LsmAD; LsmAD domain
    pfam14438
    Location:124 → 197
    SM-ATX; Ataxin 2 SM domain
    cl26464
    Location:426 → 942
    Atrophin-1; Atrophin-1 family

  5. XM_021088042.1 → XP_020943701.1  ataxin-2-like protein isoform X2

    UniProtKB/TrEMBL
    A0A8D1L921
    Conserved Domains (5) summary
    pfam06741
    Location:265 → 327
    LsmAD; LsmAD domain
    pfam14438
    Location:124 → 197
    SM-ATX; Ataxin 2 SM domain
    cl25764
    Location:783 → 987
    PAT1; Topoisomerase II-associated protein PAT1
    cl26386
    Location:901 → 1076
    DNA_pol3_gamma3; DNA polymerase III subunits gamma and tau domain III
    cl26464
    Location:426 → 973
    Atrophin-1; Atrophin-1 family

  6. XM_003354564.4 → XP_003354612.2  ataxin-2-like protein isoform X4

    UniProtKB/TrEMBL
    A0A4X1U9L9, A0A8D1F4A9, I3L9R9
    Related
    ENSSSCP00000020782.3, ENSSSCT00000029453.4
    Conserved Domains (5) summary
    pfam06741
    Location:265 → 327
    LsmAD; LsmAD domain
    pfam14438
    Location:124 → 197
    SM-ATX; Ataxin 2 SM domain
    cl25764
    Location:752 → 956
    PAT1; Topoisomerase II-associated protein PAT1
    cl26386
    Location:870 → 1055
    DNA_pol3_gamma3; DNA polymerase III subunits gamma and tau domain III
    cl26464
    Location:426 → 942
    Atrophin-1; Atrophin-1 family

  7. XM_005662050.3 → XP_005662107.2  ataxin-2-like protein isoform X8

    UniProtKB/TrEMBL
    A0A8D1F4A9
    Conserved Domains (4) summary
    pfam06741
    Location:265 → 327
    LsmAD; LsmAD domain
    pfam14438
    Location:124 → 197
    SM-ATX; Ataxin 2 SM domain
    cl25764
    Location:752 → 956
    PAT1; Topoisomerase II-associated protein PAT1
    cl26464
    Location:426 → 942
    Atrophin-1; Atrophin-1 family

  8. XM_003124511.5 → XP_003124559.3  ataxin-2-like protein isoform X5

    UniProtKB/TrEMBL
    A0A8D1F4A9
    Conserved Domains (5) summary
    pfam06741
    Location:265 → 327
    LsmAD; LsmAD domain
    pfam14438
    Location:124 → 197
    SM-ATX; Ataxin 2 SM domain
    cl25764
    Location:752 → 956
    PAT1; Topoisomerase II-associated protein PAT1
    cl26386
    Location:870 → 1045
    DNA_pol3_gamma3; DNA polymerase III subunits gamma and tau domain III
    cl26464
    Location:426 → 942
    Atrophin-1; Atrophin-1 family

  9. XM_005662054.3 → XP_005662111.2  ataxin-2-like protein isoform X10

    UniProtKB/TrEMBL
    A0A480WX05, A0A4X1UFU2, A0A8D1TMM2
    Conserved Domains (5) summary
    pfam06741
    Location:142 → 204
    LsmAD; LsmAD domain
    pfam14438
    Location:1 → 74
    SM-ATX; Ataxin 2 SM domain
    cl26386
    Location:747 → 922
    DNA_pol3_gamma3; DNA polymerase III subunits gamma and tau domain III
    cl26464
    Location:303 → 819
    Atrophin-1; Atrophin-1 family
    cl28033
    Location:205 → 365
    Herpes_ICP4_C; Herpesvirus ICP4-like protein C-terminal region

  10. XM_021088045.1 → XP_020943704.1  ataxin-2-like protein isoform X9

    UniProtKB/TrEMBL
    A0A8D1SQR1, A0A8D1TMM2
    Conserved Domains (6) summary
    pfam06741
    Location:142 → 204
    LsmAD; LsmAD domain
    pfam14438
    Location:1 → 74
    SM-ATX; Ataxin 2 SM domain
    cl25764
    Location:660 → 864
    PAT1; Topoisomerase II-associated protein PAT1
    cl26386
    Location:778 → 953
    DNA_pol3_gamma3; DNA polymerase III subunits gamma and tau domain III
    cl26464
    Location:303 → 850
    Atrophin-1; Atrophin-1 family
    cl28033
    Location:205 → 365
    Herpes_ICP4_C; Herpesvirus ICP4-like protein C-terminal region

  11. XM_021088044.1 → XP_020943703.1  ataxin-2-like protein isoform X9

    UniProtKB/TrEMBL
    A0A8D1SQR1, A0A8D1TMM2
    Conserved Domains (6) summary
    pfam06741
    Location:142 → 204
    LsmAD; LsmAD domain
    pfam14438
    Location:1 → 74
    SM-ATX; Ataxin 2 SM domain
    cl25764
    Location:660 → 864
    PAT1; Topoisomerase II-associated protein PAT1
    cl26386
    Location:778 → 953
    DNA_pol3_gamma3; DNA polymerase III subunits gamma and tau domain III
    cl26464
    Location:303 → 850
    Atrophin-1; Atrophin-1 family
    cl28033
    Location:205 → 365
    Herpes_ICP4_C; Herpesvirus ICP4-like protein C-terminal region

  12. XM_005662052.3 → XP_005662109.2  ataxin-2-like protein isoform X10

    UniProtKB/TrEMBL
    A0A480WX05, A0A4X1UFU2, A0A8D1TMM2
    Conserved Domains (5) summary
    pfam06741
    Location:142 → 204
    LsmAD; LsmAD domain
    pfam14438
    Location:1 → 74
    SM-ATX; Ataxin 2 SM domain
    cl26386
    Location:747 → 922
    DNA_pol3_gamma3; DNA polymerase III subunits gamma and tau domain III
    cl26464
    Location:303 → 819
    Atrophin-1; Atrophin-1 family
    cl28033
    Location:205 → 365
    Herpes_ICP4_C; Herpesvirus ICP4-like protein C-terminal region

  13. XM_021088048.1 → XP_020943707.1  ataxin-2-like protein isoform X11

    UniProtKB/TrEMBL
    A0A8D1D242
    Related
    ENSSSCP00000043753.2, ENSSSCT00000048591.2
    Conserved Domains (4) summary
    pfam06741
    Location:142 → 204
    LsmAD; LsmAD domain
    pfam14438
    Location:1 → 74
    SM-ATX; Ataxin 2 SM domain
    cl26464
    Location:303 → 819
    Atrophin-1; Atrophin-1 family
    cl28033
    Location:205 → 365
    Herpes_ICP4_C; Herpesvirus ICP4-like protein C-terminal region

  14. XM_021088046.1 → XP_020943705.1  ataxin-2-like protein isoform X9

    UniProtKB/TrEMBL
    A0A8D1SQR1, A0A8D1TMM2
    Conserved Domains (6) summary
    pfam06741
    Location:142 → 204
    LsmAD; LsmAD domain
    pfam14438
    Location:1 → 74
    SM-ATX; Ataxin 2 SM domain
    cl25764
    Location:660 → 864
    PAT1; Topoisomerase II-associated protein PAT1
    cl26386
    Location:778 → 953
    DNA_pol3_gamma3; DNA polymerase III subunits gamma and tau domain III
    cl26464
    Location:303 → 850
    Atrophin-1; Atrophin-1 family
    cl28033
    Location:205 → 365
    Herpes_ICP4_C; Herpesvirus ICP4-like protein C-terminal region

RNA

  1. XR_001307423.2 RNA Sequence

  2. XR_001307424.2 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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