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CCDC12 coiled-coil domain containing 12 [ Sus scrofa (pig) ]

Gene ID: 100515924, updated on 17-Aug-2024

Summary

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Official Symbol
CCDC12provided by VGNC
Official Full Name
coiled-coil domain containing 12provided by VGNC
Primary source
VGNC:VGNC:103915
See related
Ensembl:ENSSSCG00000011329
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in lung (RPKM 14.0), spleen (RPKM 11.1) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See CCDC12 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
9
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 13 NC_010455.5 (29785581..29846683, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 13 NC_010455.4 (33064788..33120575, complement)

Chromosome 13 - NC_010455.5Genomic Context describing neighboring genes Neighboring gene myosin light chain 3 Neighboring gene parathyroid hormone 1 receptor Neighboring gene uncharacterized LOC110256226 Neighboring gene neurobeachin like 2 Neighboring gene SET domain containing 2, histone lysine methyltransferase Neighboring gene uncharacterized LOC110256227

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
part_of U2-type spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of post-mRNA release spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
coiled-coil domain-containing protein 12

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010455.5 Reference Sscrofa11.1 Primary Assembly

    Range
    29785581..29846683 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005669466.3 → XP_005669523.1  coiled-coil domain-containing protein 12

    UniProtKB/TrEMBL
    A0A287A3S1, A0A4X1T7Y3, A0A5G2QDZ0, A0A8D1E850, A0A8D1SS20
    Related
    ENSSSCP00000038614.1, ENSSSCT00000044231.2
    Conserved Domains (1) summary
    pfam08315
    Location:11 → 142
    cwf18; cwf18 pre-mRNA splicing factor
Nucleotide Protein
Heading Accession and Version

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Research Materials