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PARN poly(A)-specific ribonuclease [ Sus scrofa (pig) ]

Gene ID: 100515887, updated on 17-Aug-2024

Summary

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Official Symbol
PARNprovided by VGNC
Official Full Name
poly(A)-specific ribonucleaseprovided by VGNC
Primary source
VGNC:VGNC:110695
See related
Ensembl:ENSSSCG00000007878
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in ovary (RPKM 13.8), spleen (RPKM 10.7) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See PARN in Genome Data Viewer
Location:
chromosome: 3
Exon count:
25
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 3 NC_010445.4 (28616808..28802506)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 3 NC_010445.3 (29618701..29877403)

Chromosome 3 - NC_010445.4Genomic Context describing neighboring genes Neighboring gene microRNA mir-7135 Neighboring gene ATP binding cassette subfamily C member 1 Neighboring gene uncharacterized LOC110259924 Neighboring gene bifunctional apoptosis regulator Neighboring gene uncharacterized LOC110259925 Neighboring gene uncharacterized LOC110259926 Neighboring gene glutamine synthetase pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
  2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables poly(A)-specific ribonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nuclear-transcribed mRNA poly(A) tail shortening IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
poly(A)-specific ribonuclease PARN

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010445.4 Reference Sscrofa11.1 Primary Assembly

    Range
    28616808..28802506
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021086564.1 → XP_020942223.1  poly(A)-specific ribonuclease PARN isoform X3

    UniProtKB/TrEMBL
    A0A4X1VNK0, A0A8D0M7X5
    Conserved Domains (2) summary
    pfam08675
    Location:377 → 451
    RNA_bind; RNA binding domain
    pfam04857
    Location:1 → 329
    CAF1; CAF1 family ribonuclease

  2. XM_021086561.1 → XP_020942220.1  poly(A)-specific ribonuclease PARN isoform X1

    UniProtKB/TrEMBL
    A0A4X1VPF5, A0A5G2RG64
    Related
    ENSSSCP00000073937.2, ENSSSCT00000091182.2
    Conserved Domains (2) summary
    pfam08675
    Location:438 → 512
    RNA_bind; RNA binding domain
    pfam04857
    Location:3 → 390
    CAF1; CAF1 family ribonuclease

  3. XM_021086563.1 → XP_020942222.1  poly(A)-specific ribonuclease PARN isoform X2

    UniProtKB/TrEMBL
    A0A8D0QE05, A0A8D0Z0Z9, A0A8D1I893, F1RLR7
    Related
    ENSSSCP00000008411.4, ENSSSCT00000008633.5
    Conserved Domains (2) summary
    pfam08675
    Location:412 → 486
    RNA_bind; RNA binding domain
    pfam04857
    Location:3 → 364
    CAF1; CAF1 family ribonuclease
Nucleotide Protein
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