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GALNT3 polypeptide N-acetylgalactosaminyltransferase 3 [ Sus scrofa (pig) ]

Gene ID: 100515629, updated on 17-Aug-2024

Summary

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Official Symbol
GALNT3provided by VGNC
Official Full Name
polypeptide N-acetylgalactosaminyltransferase 3provided by VGNC
Primary source
VGNC:VGNC:96313
See related
Ensembl:ENSSSCG00000015907
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Biased expression in spleen (RPKM 2.8), lung (RPKM 2.7) and 3 other tissues See more
Orthologs
human mouse all
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Genomic context

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See GALNT3 in Genome Data Viewer
Location:
chromosome: 15
Exon count:
14
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 15 NC_010457.5 (72276502..72343524, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 15 NC_010457.4 (80794975..80818272)

Chromosome 15 - NC_010457.5Genomic Context describing neighboring genes Neighboring gene tigger transposable element-derived protein 1-like Neighboring gene sodium voltage-gated channel alpha subunit 2 Neighboring gene cysteine and serine rich nuclear protein 3 Neighboring gene tetratricopeptide repeat domain 21B Neighboring gene sodium voltage-gated channel alpha subunit 1 Neighboring gene uncharacterized LOC110257170

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polypeptide N-acetylgalactosaminyltransferase 3
Names
UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 3 (GalNAc-T3)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010457.5 Reference Sscrofa11.1 Primary Assembly

    Range
    72276502..72343524 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021075048.1 → XP_020930707.1  polypeptide N-acetylgalactosaminyltransferase 3

    UniProtKB/TrEMBL
    A0A286ZJR1, A0A4X1VHI8, A0A4X1VPB2, A0A8D0NVY1, A0A8D1WXJ2
    Related
    ENSSSCP00000031768.1, ENSSSCT00000061318.2
    Conserved Domains (2) summary
    cd02510
    Location:188 → 493
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:506 → 627
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

  2. XM_021075049.1 → XP_020930708.1  polypeptide N-acetylgalactosaminyltransferase 3

    UniProtKB/TrEMBL
    A0A286ZJR1, A0A4X1VHI8, A0A4X1VPB2, A0A8D0NVY1, A0A8D1WXJ2
    Conserved Domains (2) summary
    cd02510
    Location:188 → 493
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:506 → 627
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

RNA

  1. XR_002339064.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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