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XYLT2 xylosyltransferase 2 [ Sus scrofa (pig) ]

Gene ID: 100514793, updated on 17-Aug-2024

Summary

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Official Symbol
XYLT2provided by VGNC
Official Full Name
xylosyltransferase 2provided by VGNC
Primary source
VGNC:VGNC:95016
See related
Ensembl:ENSSSCG00000017573
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in lung (RPKM 9.4), ovary (RPKM 9.3) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See XYLT2 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
11
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 12 NC_010454.4 (26640802..26656809)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 12 NC_010454.3 (26625115..26633292, complement)

Chromosome 12 - NC_010454.4Genomic Context describing neighboring genes Neighboring gene leucine-rich repeat-containing protein 37A2-like Neighboring gene uncharacterized LOC106505443 Neighboring gene leucine-rich repeat-containing protein 37A2 Neighboring gene uncharacterized LOC100515340 Neighboring gene mitochondrial ribosomal protein L27 Neighboring gene essential meiotic structure-specific endonuclease 1 Neighboring gene leucine rich repeat containing 59

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
  2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein xylosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chondroitin sulfate proteoglycan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heparan sulfate proteoglycan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
xylosyltransferase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010454.4 Reference Sscrofa11.1 Primary Assembly

    Range
    26640802..26656809
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005668924.2 → XP_005668981.2  xylosyltransferase 2

    UniProtKB/TrEMBL
    A0A4X1U0L0, A0A8D0X194, F1RT78
    Related
    ENSSSCP00000018623.2, ENSSSCT00000019129.3
    Conserved Domains (2) summary
    pfam02485
    Location:233 → 485
    Branch; Core-2/I-Branching enzyme
    pfam12529
    Location:518 → 698
    Xylo_C; Xylosyltransferase C terminal
Nucleotide Protein
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