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TM7SF2 transmembrane 7 superfamily member 2 [ Sus scrofa (pig) ]

Gene ID: 100514510, updated on 17-Aug-2024

Summary

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Official Symbol
TM7SF2provided by VGNC
Official Full Name
transmembrane 7 superfamily member 2provided by VGNC
Primary source
VGNC:VGNC:98373
See related
Ensembl:ENSSSCG00000013004
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Biased expression in liver (RPKM 84.9), mixtures (RPKM 34.5) and 3 other tissues See more
Orthologs
human mouse all
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Genomic context

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See TM7SF2 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
10
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 2 NC_010444.4 (7076778..7081502, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 2 NC_010444.3 (6203154..6213508, complement)

Chromosome 2 - NC_010444.4Genomic Context describing neighboring genes Neighboring gene mitochondrial ribosomal protein L49 Neighboring gene FAU ubiquitin like and ribosomal protein S30 fusion Neighboring gene zinc finger HIT-type containing 2 Neighboring gene VPS51 subunit of GARP complex Neighboring gene transmembrane protein 262

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
  2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in sterol biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nuclear inner membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
delta(14)-sterol reductase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010444.4 Reference Sscrofa11.1 Primary Assembly

    Range
    7076778..7081502 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003122542.4 → XP_003122590.1  delta(14)-sterol reductase

    UniProtKB/TrEMBL
    A0A480QTI0, A0A8D0LHC2, A0A8D0Q528, A0A8D0TCH0, A0A8D0VS29, F1RQU7
    Related
    ENSSSCP00000013829.4, ENSSSCT00000014215.5
    Conserved Domains (1) summary
    cl21511
    Location:9 → 418
    PEMT; Phospholipid methyltransferase
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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