DDX56 DEAD-box helicase 56 [Sus scrofa (pig)] - Gene

Summary

Official Symbol: DDX56provided by VGNC
Official Full Name: DEAD-box helicase 56provided by VGNC
Primary source: VGNC:VGNC:87232
See related: Ensembl:ENSSSCG00000016745
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Sus scrofa
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression: Ubiquitous expression in ovary (RPKM 13.7), spleen (RPKM 11.0) and 8 other tissues See more
Orthologs: human mouse all
NEW: Try the new Gene table
Try the new Transcript table

Genomic context

Location:: chromosome: 18

Exon count:: 14

Annotation release	Status	Assembly	Chr	Location
106	current	Sscrofa11.1 (GCF_000003025.6)	18	NC_010460.4 (50705613..50714967)
105	previous assembly	Sscrofa10.2 (GCF_000003025.5)	18	NC_010460.3 (55608920..55618273)

Chromosome 18 - NC_010460.4 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to reference sequence details

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help

See details

Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
BioProject: PRJNA311523
Publication: PMID 27646534
Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

Go to the top of the page Help

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

Go to the top of the page Help

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables ATP binding	IEA Inferred from Electronic Annotation more info	PubMed
enables RNA helicase activity	IEA Inferred from Electronic Annotation more info	PubMed
enables nucleic acid binding	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in nucleolus	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

Go to the top of the page Help

Preferred Names: probable ATP-dependent RNA helicase DDX56

Names: DEAD (Asp-Glu-Ala-Asp) box polypeptide 56

NP_001231472.1

EC 3.6.4.13

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001244543.1 → NP_001231472.1 probable ATP-dependent RNA helicase DDX56

Status: PROVISIONAL

Source sequence(s)

AK234104

UniProtKB/TrEMBL

A0A8D1ALC2, A0A8D1L8A2, F1SSH6

Related

ENSSSCP00000017735.3, ENSSSCT00000018227.5

Conserved Domains (3) summary

COG0513
Location:9 → 523

SrmB; Superfamily II DNA and RNA helicase [Replication, recombination and repair]

cd00079
Location:234 → 390

HELICc; Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may ...

cl21455
Location:9 → 219

P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases