UXS1 UDP-glucuronate decarboxylase 1 [Sus scrofa (pig)] - Gene

Summary

Official Symbol: UXS1provided by VGNC
Official Full Name: UDP-glucuronate decarboxylase 1provided by VGNC
Primary source: VGNC:VGNC:94791
See related: Ensembl:ENSSSCG00000008143
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Sus scrofa
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression: Ubiquitous expression in ovary (RPKM 39.9), heart (RPKM 16.1) and 8 other tissues See more
Orthologs: human mouse all
NEW: Try the new Gene table
Try the new Transcript table

Genomic context

Location:: chromosome: 3

Exon count:: 17

Annotation release	Status	Assembly	Chr	Location
106	current	Sscrofa11.1 (GCF_000003025.6)	3	NC_010445.4 (48871036..48940736)
105	previous assembly	Sscrofa10.2 (GCF_000003025.5)	3	NC_010445.3 (51082501..51149409, complement)

Chromosome 3 - NC_010445.4 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to reference sequence details

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help

See details

Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
BioProject: PRJNA311523
Publication: PMID 27646534
Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

Go to the top of the page Help

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

Go to the top of the page Help

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables NAD+ binding	IEA Inferred from Electronic Annotation more info	PubMed
enables UDP-glucuronate decarboxylase activity	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in D-xylose metabolic process	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in cytoplasm	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

Go to the top of the page Help

Preferred Names: UDP-glucuronic acid decarboxylase 1

NP_001231702.1

EC 4.1.1.35

NP_001231703.1

EC 4.1.1.35

XP_020941324.1

EC 4.1.1.35

XP_020941325.1

EC 4.1.1.35

XP_020941326.1

EC 4.1.1.35

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001244773.1 → NP_001231702.1 UDP-glucuronic acid decarboxylase 1 isoform a

Status: VALIDATED

Description

Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (a).

Source sequence(s)

AK348570

UniProtKB/TrEMBL

A0A480TRQ6, A0A8D1N0E3, F1SU22

Conserved Domains (3) summary

cd05230
Location:94 → 397

UGD_SDR_e; UDP-glucuronate decarboxylase (UGD) and related proteins, extended (e) SDRs

COG0451
Location:94 → 401

WcaG; Nucleoside-diphosphate-sugar epimerase [Cell wall/membrane/envelope biogenesis]

pfam11803
Location:5 → 83

UXS1_N; UDP-glucuronate decarboxylase N-terminal
NM_001244774.1 → NP_001231703.1 UDP-glucuronic acid decarboxylase 1 isoform b

Status: VALIDATED

Description

Transcript Variant: This variant (2) uses an alternate in-frame splice site in the internal coding region, compared to variant 1. It encodes isoform b, which is shorter than isoform a.

Source sequence(s)

AK240525

UniProtKB/TrEMBL

A0A8D1N0E3, F1SU22

Related

ENSSSCP00000008694.4, ENSSSCT00000008920.5

Conserved Domains (3) summary

cd05230
Location:89 → 392

UGD_SDR_e; UDP-glucuronate decarboxylase (UGD) and related proteins, extended (e) SDRs

COG0451
Location:89 → 396

WcaG; Nucleoside-diphosphate-sugar epimerase [Cell wall/membrane/envelope biogenesis]

pfam11803
Location:5 → 78

UXS1_N; UDP-glucuronate decarboxylase N-terminal

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

NC_010445.4 Reference Sscrofa11.1 Primary Assembly

Range

48871036..48940736

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_021085665.1 → XP_020941324.1 UDP-glucuronic acid decarboxylase 1 isoform X1

UniProtKB/TrEMBL

A0A8D0K1K6, A0A8D1D3S5, A0A8D1UBU5

Conserved Domains (2) summary

cd05230
Location:50 → 353

UGD_SDR_e; UDP-glucuronate decarboxylase (UGD) and related proteins, extended (e) SDRs

pfam11803
Location:1 → 39

UXS1_N; UDP-glucuronate decarboxylase N-terminal
XM_021085666.1 → XP_020941325.1 UDP-glucuronic acid decarboxylase 1 isoform X2

Conserved Domains (1) summary

cd05230
Location:1 → 284

UGD_SDR_e; UDP-glucuronate decarboxylase (UGD) and related proteins, extended (e) SDRs
XM_021085667.1 → XP_020941326.1 UDP-glucuronic acid decarboxylase 1 isoform X2

Conserved Domains (1) summary

cd05230
Location:1 → 284

UGD_SDR_e; UDP-glucuronate decarboxylase (UGD) and related proteins, extended (e) SDRs