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CBR3 carbonyl reductase 3 [ Sus scrofa (pig) ]

Gene ID: 100512990, updated on 17-Aug-2024

Summary

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Official Symbol
CBR3provided by VGNC
Official Full Name
carbonyl reductase 3provided by VGNC
Primary source
VGNC:VGNC:86228
See related
Ensembl:ENSSSCG00000012053
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Broad expression in ovary (RPKM 10.7), subcutaneous adipose (RPKM 5.2) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See CBR3 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
3
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 13 NC_010455.5 (199830690..199840444)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 13 NC_010455.4 (209842863..209852618)

Chromosome 13 - NC_010455.5Genomic Context describing neighboring genes Neighboring gene carbonyl reductase [NADPH] 1-like Neighboring gene carbonyl reductase [NADPH] 1-like Neighboring gene DOP1 leucine zipper like protein B Neighboring gene MORC family CW-type zinc finger 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
  2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables carbonyl reductase (NADPH) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carbonyl reductase [NADPH] 3
NP_001231661.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001244732.1 → NP_001231661.1  carbonyl reductase [NADPH] 3

    Status: VALIDATED

    Source sequence(s)
    AK347045
    UniProtKB/TrEMBL
    A0A4X1TQT9, A0A4X1TTK5, A0A8D0I029, F1SGX4
    Related
    ENSSSCP00000012833.2, ENSSSCT00000013185.4
    Conserved Domains (2) summary
    cd05324
    Location:6 → 277
    carb_red_PTCR-like_SDR_c; Porcine testicular carbonyl reductase (PTCR)-like, classical (c) SDRs
    pfam00106
    Location:6 → 237
    adh_short; short chain dehydrogenase

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010455.5 Reference Sscrofa11.1 Primary Assembly

    Range
    199830690..199840444
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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