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ECHDC1 ethylmalonyl-CoA decarboxylase 1 [ Sus scrofa (pig) ]

Gene ID: 100512509, updated on 17-Aug-2024

Summary

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Official Symbol
ECHDC1provided by VGNC
Official Full Name
ethylmalonyl-CoA decarboxylase 1provided by VGNC
Primary source
VGNC:VGNC:97972
See related
Ensembl:ENSSSCG00000004216
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in subcutaneous adipose (RPKM 7.6), liver (RPKM 5.1) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See ECHDC1 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
8
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 1 NC_010443.5 (35852939..35909314)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 1 NC_010443.4 (39547637..39593564)

Chromosome 1 - NC_010443.5Genomic Context describing neighboring genes Neighboring gene protein LEG1 homolog Neighboring gene MTCL family member 3 Neighboring gene KIAA0408 Neighboring gene uncharacterized LOC110260186 Neighboring gene ring finger protein 146 Neighboring gene R-spondin 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables enoyl-CoA hydratase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in fatty acid beta-oxidation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ethylmalonyl-CoA decarboxylase
Names
enoyl CoA hydratase domain containing 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010443.5 Reference Sscrofa11.1 Primary Assembly

    Range
    35852939..35909314
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021088555.1 → XP_020944214.1  ethylmalonyl-CoA decarboxylase isoform X1

    UniProtKB/TrEMBL
    A0A286ZZC3, A0A4X1UF11, A0A8D0UWI7, A0A8D0XCB4
    Related
    ENSSSCP00000036988.1, ENSSSCT00000057506.2
    Conserved Domains (1) summary
    cd06558
    Location:53 → 244
    crotonase-like; Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. ...

  2. XM_021088558.1 → XP_020944217.1  ethylmalonyl-CoA decarboxylase isoform X1

    UniProtKB/TrEMBL
    A0A286ZZC3, A0A4X1UF11, A0A8D0UWI7, A0A8D0XCB4
    Conserved Domains (1) summary
    cd06558
    Location:53 → 244
    crotonase-like; Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. ...

  3. XM_013988459.2 → XP_013843913.1  ethylmalonyl-CoA decarboxylase isoform X2

    UniProtKB/TrEMBL
    A0A4X1U9R9
    Conserved Domains (1) summary
    cd06558
    Location:53 → 123
    crotonase-like; Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. ...

  4. XM_003121214.6 → XP_003121262.3  ethylmalonyl-CoA decarboxylase isoform X1

    UniProtKB/TrEMBL
    A0A286ZZC3, A0A4X1UF11, A0A8D0UWI7, A0A8D0XCB4
    Related
    ENSSSCP00000004552.4, ENSSSCT00000004659.5
    Conserved Domains (1) summary
    cd06558
    Location:53 → 244
    crotonase-like; Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. ...

  5. XM_005652682.3 → XP_005652739.1  ethylmalonyl-CoA decarboxylase isoform X2

    UniProtKB/TrEMBL
    A0A4X1U9R9
    Conserved Domains (1) summary
    cd06558
    Location:53 → 123
    crotonase-like; Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. ...
Nucleotide Protein
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