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SHANK1 SH3 and multiple ankyrin repeat domains 1 [ Sus scrofa (pig) ]

Gene ID: 100512353, updated on 8-Mar-2024

Summary

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Gene symbol
SHANK1
Gene description
SH3 and multiple ankyrin repeat domains 1
See related
Ensembl:ENSSSCG00000062536
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Biased expression in mixtures (RPKM 6.6) and ovary (RPKM 1.6) See more
Orthologs
human mouse all
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Genomic context

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See SHANK1 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
23
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 6 NC_010448.4 (55452095..55496304, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 6 NC_010448.3 (51348953..51395795, complement)

Chromosome 6 - NC_010448.4Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110261022 Neighboring gene synaptotagmin 3 Neighboring gene chromosome 6 C19orf81 homolog Neighboring gene uncharacterized LOC110261023 Neighboring gene C-type lectin domain containing 11A Neighboring gene G protein-coupled receptor 32

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ionotropic glutamate receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables synaptic receptor adaptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in dendritic spine IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in postsynaptic density IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in postsynaptic membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: SH3 and multiple ankyrin repeat domains protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010448.4 Reference Sscrofa11.1 Primary Assembly

    Range
    55452095..55496304 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003127374.5 → XP_003127422.3  LOW QUALITY PROTEIN: SH3 and multiple ankyrin repeat domains protein 1

    UniProtKB/TrEMBL
    A0A8D1R2L1
    Related
    ENSSSCP00000076151.1, ENSSSCT00000097392.1
    Conserved Domains (6) summary
    cd09506
    Location:2100 → 2165
    SAM_Shank1,2,3; SAM domain of Shank1,2,3 family proteins
    cd11982
    Location:557 → 608
    SH3_Shank1; Src homology 3 domain of SH3 and multiple ankyrin repeat domains protein 1
    cd00204
    Location:274 → 399
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    cd00992
    Location:661 → 754
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    sd00045
    Location:279 → 311
    ANK; ANK repeat [structural motif]
    pfam16511
    Location:73 → 156
    FERM_f0; N-terminal or F0 domain of Talin-head FERM
Nucleotide Protein
Heading Accession and Version

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